Hb_000618_110

Information

Type -
Description -
Location Contig618: 180213-188972
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09870g
description hypothetical protein
nr
ID XP_006385688.1
description hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
swissprot
ID Q9FVQ4
description Plastidal glycolate/glycerate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PLGG1 PE=2 SV=1
trembl
ID U5GIY7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09870g PE=4 SV=1
Gene Ontology
ID GO:0009706
description plastidal glycolate glycerate translocator chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51315: 180391-188957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000618_110 0.0 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
2 Hb_004096_210 0.0520042098 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
3 Hb_000847_030 0.0789356431 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
4 Hb_000140_460 0.0813035698 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
5 Hb_006970_030 0.1000174387 - - synaptotagmin, putative [Ricinus communis]
6 Hb_000866_020 0.101088865 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
7 Hb_009393_130 0.1064381891 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
8 Hb_003018_150 0.1064823765 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
9 Hb_000327_260 0.1067406229 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005694_120 0.1088852019 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
11 Hb_006472_040 0.1103021047 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
12 Hb_000948_120 0.1103555785 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
13 Hb_069696_020 0.1105450083 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
14 Hb_009838_070 0.1114794533 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
15 Hb_001541_280 0.111619446 - - phosphate transporter [Manihot esculenta]
16 Hb_000856_280 0.1117103888 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
17 Hb_000984_160 0.1133081404 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
18 Hb_091433_050 0.1137688418 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
19 Hb_000002_300 0.1151523675 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
20 Hb_001946_120 0.1153373969 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000618_110 Hb_000618_110 Hb_004096_210 Hb_004096_210 Hb_000618_110--Hb_004096_210 Hb_000847_030 Hb_000847_030 Hb_000618_110--Hb_000847_030 Hb_000140_460 Hb_000140_460 Hb_000618_110--Hb_000140_460 Hb_006970_030 Hb_006970_030 Hb_000618_110--Hb_006970_030 Hb_000866_020 Hb_000866_020 Hb_000618_110--Hb_000866_020 Hb_009393_130 Hb_009393_130 Hb_000618_110--Hb_009393_130 Hb_009838_070 Hb_009838_070 Hb_004096_210--Hb_009838_070 Hb_004096_210--Hb_009393_130 Hb_000327_260 Hb_000327_260 Hb_004096_210--Hb_000327_260 Hb_004096_210--Hb_000866_020 Hb_000816_240 Hb_000816_240 Hb_004096_210--Hb_000816_240 Hb_005694_120 Hb_005694_120 Hb_000847_030--Hb_005694_120 Hb_003018_150 Hb_003018_150 Hb_000847_030--Hb_003018_150 Hb_000984_160 Hb_000984_160 Hb_000847_030--Hb_000984_160 Hb_001946_120 Hb_001946_120 Hb_000847_030--Hb_001946_120 Hb_001210_060 Hb_001210_060 Hb_000847_030--Hb_001210_060 Hb_069696_020 Hb_069696_020 Hb_000140_460--Hb_069696_020 Hb_002073_150 Hb_002073_150 Hb_000140_460--Hb_002073_150 Hb_000140_460--Hb_006970_030 Hb_000140_460--Hb_000984_160 Hb_018591_020 Hb_018591_020 Hb_000140_460--Hb_018591_020 Hb_153258_040 Hb_153258_040 Hb_006970_030--Hb_153258_040 Hb_003777_080 Hb_003777_080 Hb_006970_030--Hb_003777_080 Hb_004970_060 Hb_004970_060 Hb_006970_030--Hb_004970_060 Hb_000950_020 Hb_000950_020 Hb_006970_030--Hb_000950_020 Hb_000049_100 Hb_000049_100 Hb_006970_030--Hb_000049_100 Hb_003177_050 Hb_003177_050 Hb_000866_020--Hb_003177_050 Hb_000866_020--Hb_000327_260 Hb_000352_280 Hb_000352_280 Hb_000866_020--Hb_000352_280 Hb_074197_030 Hb_074197_030 Hb_000866_020--Hb_074197_030 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009393_130--Hb_009838_070 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0515026 0.597556 3.29038 2.42673 0.0286239 0.176459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0673145 0.13239 0.0496185 0.423152 5.79993

CAGE analysis