Hb_000619_070

Information

Type -
Description -
Location Contig619: 59519-82854
Sequence    

Annotation

kegg
ID rcu:RCOM_1331420
description DNA mismatch repair protein mlh1, putative
nr
ID XP_012085006.1
description PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
swissprot
ID Q9ZRV4
description DNA mismatch repair protein MLH1 OS=Arabidopsis thaliana GN=MLH1 PE=2 SV=1
trembl
ID A0A067JSP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22196 PE=4 SV=1
Gene Ontology
ID GO:0000790
description dna mismatch repair protein mlh1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51353: 59831-60317 , PASA_asmbl_51354: 60438-60893 , PASA_asmbl_51355: 61878-68809 , PASA_asmbl_51356: 69014-70617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000619_070 0.0 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
2 Hb_035360_010 0.0527340419 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
3 Hb_000608_340 0.0822787479 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
4 Hb_000779_040 0.0955486164 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
5 Hb_003673_020 0.0965107231 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
6 Hb_045502_010 0.0995896649 - - prefoldin subunit 1 [Jatropha curcas]
7 Hb_019871_020 0.1019820144 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
8 Hb_000544_120 0.1049766186 - - PREDICTED: thymidylate kinase [Jatropha curcas]
9 Hb_000792_110 0.1053393824 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
10 Hb_000173_210 0.1074553021 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
11 Hb_006631_010 0.1080715421 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
12 Hb_004531_090 0.1086505251 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
13 Hb_000016_180 0.1111613246 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_000211_090 0.1118594477 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
15 Hb_000185_090 0.1120138704 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
16 Hb_000018_160 0.1179077546 - - nitrate transporter, putative [Ricinus communis]
17 Hb_000392_280 0.1195184367 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
18 Hb_000212_130 0.1243786338 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000211_080 0.1251457415 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_002405_020 0.1291735354 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000619_070 Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000619_070--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_000619_070--Hb_000608_340 Hb_000779_040 Hb_000779_040 Hb_000619_070--Hb_000779_040 Hb_003673_020 Hb_003673_020 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_035360_010--Hb_003673_020 Hb_000792_110 Hb_000792_110 Hb_035360_010--Hb_000792_110 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_035360_010--Hb_000211_090 Hb_000608_340--Hb_000779_040 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_003666_050 Hb_003666_050 Hb_000608_340--Hb_003666_050 Hb_000890_220 Hb_000890_220 Hb_000779_040--Hb_000890_220 Hb_000779_040--Hb_000211_090 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_000779_040--Hb_003673_020 Hb_003673_020--Hb_000211_090 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_003673_020--Hb_003666_050 Hb_045502_010--Hb_035360_010 Hb_000038_150 Hb_000038_150 Hb_045502_010--Hb_000038_150 Hb_003581_110 Hb_003581_110 Hb_045502_010--Hb_003581_110 Hb_045502_010--Hb_003673_020 Hb_000392_280 Hb_000392_280 Hb_045502_010--Hb_000392_280 Hb_001582_030 Hb_001582_030 Hb_019871_020--Hb_001582_030 Hb_006173_020 Hb_006173_020 Hb_019871_020--Hb_006173_020 Hb_019871_020--Hb_004531_090 Hb_000185_090 Hb_000185_090 Hb_019871_020--Hb_000185_090 Hb_000940_040 Hb_000940_040 Hb_019871_020--Hb_000940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4381 7.82626 2.92782 3.54644 41.6193 30.5786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.39974 3.31563 4.28459 3.18415 0.943676

CAGE analysis