Hb_000619_080

Information

Type -
Description -
Location Contig619: 84859-86967
Sequence    

Annotation

kegg
ID vvi:100241918
description DEAD-box ATP-dependent RNA helicase 21-like
nr
ID XP_012074968.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
swissprot
ID P93008
description DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1
trembl
ID A0A067KHE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09094 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51357: 84455-87024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000619_080 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
2 Hb_175338_030 0.0652279229 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
3 Hb_002307_100 0.0731457708 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
4 Hb_007757_110 0.081615695 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
5 Hb_010175_020 0.0857544369 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_002477_160 0.0871285025 - - hypothetical protein L484_013453 [Morus notabilis]
7 Hb_001975_160 0.0876719987 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000836_360 0.0902531145 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
9 Hb_007943_080 0.0934860439 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
10 Hb_000776_110 0.0957267194 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
11 Hb_001635_100 0.0959730039 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
12 Hb_000953_010 0.0964178732 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
13 Hb_007558_140 0.0988040847 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
14 Hb_001728_100 0.0995320017 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
15 Hb_019654_100 0.0997279968 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
16 Hb_000152_820 0.1000861366 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
17 Hb_000500_040 0.1003403577 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001085_170 0.1015231261 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
19 Hb_001245_070 0.1015705573 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
20 Hb_000317_020 0.1020746877 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]

Gene co-expression network

sample Hb_000619_080 Hb_000619_080 Hb_175338_030 Hb_175338_030 Hb_000619_080--Hb_175338_030 Hb_002307_100 Hb_002307_100 Hb_000619_080--Hb_002307_100 Hb_007757_110 Hb_007757_110 Hb_000619_080--Hb_007757_110 Hb_010175_020 Hb_010175_020 Hb_000619_080--Hb_010175_020 Hb_002477_160 Hb_002477_160 Hb_000619_080--Hb_002477_160 Hb_001975_160 Hb_001975_160 Hb_000619_080--Hb_001975_160 Hb_175338_030--Hb_002307_100 Hb_175338_030--Hb_002477_160 Hb_175338_030--Hb_010175_020 Hb_175338_030--Hb_007757_110 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_002307_100--Hb_002477_160 Hb_002307_100--Hb_007757_110 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_007757_110--Hb_010175_020 Hb_001584_150 Hb_001584_150 Hb_007757_110--Hb_001584_150 Hb_000152_820 Hb_000152_820 Hb_007757_110--Hb_000152_820 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_010175_020--Hb_000152_820 Hb_000317_020 Hb_000317_020 Hb_010175_020--Hb_000317_020 Hb_000413_180 Hb_000413_180 Hb_010175_020--Hb_000413_180 Hb_002477_160--Hb_007558_140 Hb_000120_950 Hb_000120_950 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_011918_080 Hb_011918_080 Hb_002477_160--Hb_011918_080 Hb_001507_020 Hb_001507_020 Hb_001975_160--Hb_001507_020 Hb_001975_160--Hb_000317_020 Hb_013405_030 Hb_013405_030 Hb_001975_160--Hb_013405_030 Hb_000776_110 Hb_000776_110 Hb_001975_160--Hb_000776_110 Hb_001975_160--Hb_007757_110 Hb_001975_160--Hb_000152_820
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.729 64.904 15.0376 23.836 81.4849 77.3349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.9931 43.2534 126.24 37.7887 29.0276

CAGE analysis