Hb_000620_050

Information

Type -
Description -
Location Contig620: 89281-91846
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18140g
description POPTRDRAFT_833725; hypothetical protein
nr
ID XP_012092154.1
description PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L871
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19692 PE=4 SV=1
Gene Ontology
ID GO:0009855
description c-type mannose receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51497: 89140-91368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000620_050 0.0 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
2 Hb_002925_060 0.077458685 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
3 Hb_184074_010 0.0805665332 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
4 Hb_003371_280 0.0863936524 - - unnamed protein product [Vitis vinifera]
5 Hb_182869_010 0.0874799972 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_003058_240 0.087589899 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
7 Hb_011519_040 0.0930286044 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
8 Hb_000368_050 0.0972893717 - - beta-galactosidase, putative [Ricinus communis]
9 Hb_000866_400 0.1014283584 - - -
10 Hb_000377_130 0.1035954291 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
11 Hb_000334_030 0.1063180508 - - conserved hypothetical protein [Ricinus communis]
12 Hb_047612_010 0.1085097724 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
13 Hb_001408_200 0.1087605143 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
14 Hb_000402_060 0.1092956115 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
15 Hb_001268_290 0.1110347636 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
16 Hb_006755_030 0.1153755227 - - BURP domain-containing protein, putative [Theobroma cacao]
17 Hb_009476_080 0.1160985997 - - BnaA03g18920D [Brassica napus]
18 Hb_001500_090 0.1163815947 - - conserved hypothetical protein [Ricinus communis]
19 Hb_186765_010 0.1201792707 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
20 Hb_031579_010 0.12019683 - - JHL22C18.10 [Jatropha curcas]

Gene co-expression network

sample Hb_000620_050 Hb_000620_050 Hb_002925_060 Hb_002925_060 Hb_000620_050--Hb_002925_060 Hb_184074_010 Hb_184074_010 Hb_000620_050--Hb_184074_010 Hb_003371_280 Hb_003371_280 Hb_000620_050--Hb_003371_280 Hb_182869_010 Hb_182869_010 Hb_000620_050--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_000620_050--Hb_003058_240 Hb_011519_040 Hb_011519_040 Hb_000620_050--Hb_011519_040 Hb_001408_200 Hb_001408_200 Hb_002925_060--Hb_001408_200 Hb_002925_060--Hb_182869_010 Hb_002925_060--Hb_003058_240 Hb_047612_010 Hb_047612_010 Hb_002925_060--Hb_047612_010 Hb_000402_060 Hb_000402_060 Hb_002925_060--Hb_000402_060 Hb_000334_030 Hb_000334_030 Hb_184074_010--Hb_000334_030 Hb_000959_110 Hb_000959_110 Hb_184074_010--Hb_000959_110 Hb_004930_020 Hb_004930_020 Hb_184074_010--Hb_004930_020 Hb_184074_010--Hb_003371_280 Hb_006755_030 Hb_006755_030 Hb_184074_010--Hb_006755_030 Hb_002370_020 Hb_002370_020 Hb_003371_280--Hb_002370_020 Hb_002374_510 Hb_002374_510 Hb_003371_280--Hb_002374_510 Hb_000866_400 Hb_000866_400 Hb_003371_280--Hb_000866_400 Hb_003371_280--Hb_011519_040 Hb_000368_050 Hb_000368_050 Hb_182869_010--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_182869_010--Hb_001511_220 Hb_005711_030 Hb_005711_030 Hb_182869_010--Hb_005711_030 Hb_182869_010--Hb_003058_240 Hb_000103_440 Hb_000103_440 Hb_003058_240--Hb_000103_440 Hb_003058_240--Hb_000402_060 Hb_001140_290 Hb_001140_290 Hb_003058_240--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_003058_240--Hb_002151_070 Hb_009476_080 Hb_009476_080 Hb_003058_240--Hb_009476_080 Hb_002809_180 Hb_002809_180 Hb_003058_240--Hb_002809_180 Hb_000377_130 Hb_000377_130 Hb_011519_040--Hb_000377_130 Hb_186765_010 Hb_186765_010 Hb_011519_040--Hb_186765_010 Hb_011519_040--Hb_006755_030 Hb_091236_010 Hb_091236_010 Hb_011519_040--Hb_091236_010 Hb_011519_040--Hb_001408_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0184733 0.374913 1.43316 13.9145 0 0.0162407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.37087 9.67081

CAGE analysis