Hb_000620_080

Information

Type -
Description -
Location Contig620: 151733-157330
Sequence    

Annotation

kegg
ID rcu:RCOM_0729670
description Small nuclear ribonucleoprotein E, putative
nr
ID EMT17136.1
description hypothetical protein F775_32679 [Aegilops tauschii]
swissprot
ID A1XQR9
description Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1
trembl
ID R7W6X2
description Uncharacterized protein OS=Aegilops tauschii GN=F775_32679 PE=4 SV=1
Gene Ontology
ID GO:0005681
description small nuclear ribonucleoprotein e-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51498: 151751-157329 , PASA_asmbl_51499: 154676-154897 , PASA_asmbl_51501: 153682-154008
cDNA
(Sanger)
(ID:Location)		 006_P10.ab1: 151758-157330 , 007_J12.ab1: 151761-157329 , 008_P06.ab1: 151757-157329 , 009_N04.ab1: 151761-157303 , 018_G17.ab1: 151732-157274 , 029_B24.ab1: 151757-157329 , 044_H10.ab1: 151761-157303 , 053_C11.ab1: 151758-157327

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000620_080 0.0 - - hypothetical protein F775_32679 [Aegilops tauschii]
2 Hb_141131_010 0.0683877 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
3 Hb_004128_190 0.0800084447 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
4 Hb_001454_140 0.0802301906 - - protein arginine n-methyltransferase, putative [Ricinus communis]
5 Hb_004374_200 0.0841912413 - - putative GMP synthase [Oxybasis rubra]
6 Hb_001124_210 0.0872903107 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000771_100 0.089846329 - - Os06g0527300 [Oryza sativa Japonica Group]
8 Hb_000364_010 0.0904133554 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
9 Hb_004944_010 0.0935340868 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
10 Hb_012305_050 0.0936512089 - - unnamed protein product [Coffea canephora]
11 Hb_003847_080 0.0944318174 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
12 Hb_002217_310 0.096768424 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
13 Hb_000510_090 0.096866534 - - 40S ribosomal protein S15 [Morus notabilis]
14 Hb_000245_130 0.0968692067 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
15 Hb_000045_090 0.0974747782 - - PREDICTED: syntaxin-31 [Jatropha curcas]
16 Hb_012008_020 0.097614096 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
17 Hb_000347_200 0.0983044167 - - lsm1, putative [Ricinus communis]
18 Hb_010180_020 0.0986829852 - - hypothetical protein glysoja_030394 [Glycine soja]
19 Hb_002078_150 0.0987981371 - - protein with unknown function [Ricinus communis]
20 Hb_002374_160 0.0988141972 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000620_080 Hb_000620_080 Hb_141131_010 Hb_141131_010 Hb_000620_080--Hb_141131_010 Hb_004128_190 Hb_004128_190 Hb_000620_080--Hb_004128_190 Hb_001454_140 Hb_001454_140 Hb_000620_080--Hb_001454_140 Hb_004374_200 Hb_004374_200 Hb_000620_080--Hb_004374_200 Hb_001124_210 Hb_001124_210 Hb_000620_080--Hb_001124_210 Hb_000771_100 Hb_000771_100 Hb_000620_080--Hb_000771_100 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_141131_010--Hb_001124_210 Hb_003038_030 Hb_003038_030 Hb_141131_010--Hb_003038_030 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_002078_150 Hb_002078_150 Hb_004128_190--Hb_002078_150 Hb_003847_080 Hb_003847_080 Hb_004128_190--Hb_003847_080 Hb_000245_130 Hb_000245_130 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_002374_160 Hb_002374_160 Hb_001454_140--Hb_002374_160 Hb_004374_200--Hb_007101_100 Hb_005686_110 Hb_005686_110 Hb_004374_200--Hb_005686_110 Hb_004374_200--Hb_002374_160 Hb_004374_200--Hb_001124_210 Hb_001124_210--Hb_003847_080 Hb_001124_210--Hb_002078_150 Hb_158092_070 Hb_158092_070 Hb_001124_210--Hb_158092_070 Hb_123475_010 Hb_123475_010 Hb_001124_210--Hb_123475_010 Hb_000363_500 Hb_000363_500 Hb_001124_210--Hb_000363_500 Hb_002272_260 Hb_002272_260 Hb_000771_100--Hb_002272_260 Hb_000155_180 Hb_000155_180 Hb_000771_100--Hb_000155_180 Hb_000347_340 Hb_000347_340 Hb_000771_100--Hb_000347_340 Hb_086703_010 Hb_086703_010 Hb_000771_100--Hb_086703_010 Hb_000676_290 Hb_000676_290 Hb_000771_100--Hb_000676_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
347.927 159.565 82.3947 238.461 279.225 731.229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
419.419 453.019 286.828 115.763 100.19

CAGE analysis