Hb_000621_060

Information

Type -
Description -
Location Contig621: 54366-58680
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15600g
description hypothetical protein
nr
ID XP_012077981.1
description PREDICTED: zinc transporter 5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12986 PE=4 SV=1
Gene Ontology
ID GO:0044765
description zinc transporter 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000621_060 0.0 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
2 Hb_025236_040 0.0969683562 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008406_160 0.0980800628 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
4 Hb_001009_040 0.1019143301 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
5 Hb_000065_080 0.1020593523 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
6 Hb_000258_410 0.1097877557 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
7 Hb_007632_090 0.1104230628 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
8 Hb_001158_220 0.1113570157 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
9 Hb_003746_040 0.1127624198 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
10 Hb_001021_230 0.1130949225 - - -
11 Hb_008578_010 0.1154036808 - - 30S ribosomal protein S19, putative [Ricinus communis]
12 Hb_000808_040 0.117713971 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
13 Hb_000622_100 0.1194751457 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
14 Hb_004032_060 0.1199293952 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
15 Hb_005016_170 0.1204420066 - - conserved hypothetical protein [Ricinus communis]
16 Hb_070739_010 0.121678293 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
17 Hb_007632_250 0.1224238173 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003874_020 0.1230023144 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
19 Hb_000997_060 0.1237757548 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
20 Hb_007441_340 0.1244530113 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000621_060 Hb_000621_060 Hb_025236_040 Hb_025236_040 Hb_000621_060--Hb_025236_040 Hb_008406_160 Hb_008406_160 Hb_000621_060--Hb_008406_160 Hb_001009_040 Hb_001009_040 Hb_000621_060--Hb_001009_040 Hb_000065_080 Hb_000065_080 Hb_000621_060--Hb_000065_080 Hb_000258_410 Hb_000258_410 Hb_000621_060--Hb_000258_410 Hb_007632_090 Hb_007632_090 Hb_000621_060--Hb_007632_090 Hb_001951_260 Hb_001951_260 Hb_025236_040--Hb_001951_260 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_000084_290 Hb_000084_290 Hb_025236_040--Hb_000084_290 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_025236_040--Hb_000290_020 Hb_008406_160--Hb_000258_410 Hb_000808_040 Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_015941_030 Hb_015941_030 Hb_008406_160--Hb_015941_030 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050 Hb_000169_010 Hb_000169_010 Hb_001009_040--Hb_000169_010 Hb_005389_150 Hb_005389_150 Hb_001009_040--Hb_005389_150 Hb_001009_040--Hb_000808_040 Hb_061908_010 Hb_061908_010 Hb_001009_040--Hb_061908_010 Hb_001158_220 Hb_001158_220 Hb_001009_040--Hb_001158_220 Hb_001009_040--Hb_008406_160 Hb_003874_020 Hb_003874_020 Hb_000065_080--Hb_003874_020 Hb_002107_160 Hb_002107_160 Hb_000065_080--Hb_002107_160 Hb_000065_080--Hb_001009_040 Hb_000065_080--Hb_025236_040 Hb_001278_110 Hb_001278_110 Hb_000065_080--Hb_001278_110 Hb_000258_410--Hb_000997_060 Hb_000237_230 Hb_000237_230 Hb_000258_410--Hb_000237_230 Hb_005271_070 Hb_005271_070 Hb_000258_410--Hb_005271_070 Hb_011537_040 Hb_011537_040 Hb_000258_410--Hb_011537_040 Hb_000176_110 Hb_000176_110 Hb_000258_410--Hb_000176_110 Hb_003125_040 Hb_003125_040 Hb_007632_090--Hb_003125_040 Hb_007632_090--Hb_000997_060 Hb_007632_090--Hb_005389_150 Hb_007632_090--Hb_001009_040 Hb_000617_320 Hb_000617_320 Hb_007632_090--Hb_000617_320 Hb_007441_340 Hb_007441_340 Hb_007632_090--Hb_007441_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45919 0.790378 0.903556 1.48687 4.26512 4.06244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0746 3.49588 0.534968 1.03855 0.679383

CAGE analysis