Hb_000621_080

Information

Type -
Description -
Location Contig621: 94954-97495
Sequence    

Annotation

kegg
ID rcu:RCOM_1571370
description hypothetical protein
nr
ID XP_002521225.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5F6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1571370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51514: 94954-97447 , PASA_asmbl_51515: 94982-95751 , PASA_asmbl_51517: 96275-96475
cDNA
(Sanger)
(ID:Location)		 004_P22.ab1: 94954-97239 , 015_M24.ab1: 94967-97173 , 028_G20.ab1: 94954-97159 , 034_E04.ab1: 94967-97230 , 044_E08.ab1: 94967-97086

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000621_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000923_020 0.0730293461 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
3 Hb_002495_070 0.0761722122 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
4 Hb_004722_060 0.0763673972 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
5 Hb_002150_080 0.077980632 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
6 Hb_086639_070 0.0781024388 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
7 Hb_001610_110 0.0816086391 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
8 Hb_002375_020 0.0835039298 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
9 Hb_004109_200 0.0843021008 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
10 Hb_001623_420 0.0885325983 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_001301_160 0.0889763106 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
12 Hb_009615_150 0.0906390766 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
13 Hb_005928_110 0.0909312078 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
14 Hb_026198_050 0.0914107636 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
15 Hb_001511_020 0.0915515099 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
16 Hb_010381_070 0.0920379891 - - PREDICTED: protein STU1-like [Jatropha curcas]
17 Hb_000008_330 0.0929338384 - - 60S ribosomal protein L12A [Hevea brasiliensis]
18 Hb_000421_070 0.0938378316 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000661_250 0.0938837557 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_000099_240 0.0942230398 - - 60S ribosomal protein L7a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000621_080 Hb_000621_080 Hb_000923_020 Hb_000923_020 Hb_000621_080--Hb_000923_020 Hb_002495_070 Hb_002495_070 Hb_000621_080--Hb_002495_070 Hb_004722_060 Hb_004722_060 Hb_000621_080--Hb_004722_060 Hb_002150_080 Hb_002150_080 Hb_000621_080--Hb_002150_080 Hb_086639_070 Hb_086639_070 Hb_000621_080--Hb_086639_070 Hb_001610_110 Hb_001610_110 Hb_000621_080--Hb_001610_110 Hb_003777_330 Hb_003777_330 Hb_000923_020--Hb_003777_330 Hb_000099_240 Hb_000099_240 Hb_000923_020--Hb_000099_240 Hb_004223_090 Hb_004223_090 Hb_000923_020--Hb_004223_090 Hb_002375_020 Hb_002375_020 Hb_000923_020--Hb_002375_020 Hb_001377_290 Hb_001377_290 Hb_000923_020--Hb_001377_290 Hb_002495_070--Hb_004722_060 Hb_000768_050 Hb_000768_050 Hb_002495_070--Hb_000768_050 Hb_005489_130 Hb_005489_130 Hb_002495_070--Hb_005489_130 Hb_002495_070--Hb_002150_080 Hb_010449_020 Hb_010449_020 Hb_002495_070--Hb_010449_020 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_003688_100 Hb_003688_100 Hb_004722_060--Hb_003688_100 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_000139_410 Hb_000139_410 Hb_002150_080--Hb_000139_410 Hb_010381_070 Hb_010381_070 Hb_002150_080--Hb_010381_070 Hb_002085_110 Hb_002085_110 Hb_002150_080--Hb_002085_110 Hb_002685_170 Hb_002685_170 Hb_002150_080--Hb_002685_170 Hb_000661_250 Hb_000661_250 Hb_086639_070--Hb_000661_250 Hb_000808_040 Hb_000808_040 Hb_086639_070--Hb_000808_040 Hb_000000_160 Hb_000000_160 Hb_086639_070--Hb_000000_160 Hb_070739_010 Hb_070739_010 Hb_086639_070--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_086639_070--Hb_001259_090 Hb_007919_060 Hb_007919_060 Hb_086639_070--Hb_007919_060 Hb_001623_140 Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_001610_110--Hb_086639_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
266.415 196.277 104.623 77.4882 254.407 266.478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
244.202 272.422 183.119 97.6027 21.2261

CAGE analysis