Hb_000622_040

Information

Type -
Description -
Location Contig622: 66831-68292
Sequence    

Annotation

kegg
ID sly:101254839
description uncharacterized LOC101254839
nr
ID XP_010255931.1
description PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID K4B090
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g097020.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51542: 66851-68269 , PASA_asmbl_51543: 66884-67435
cDNA
(Sanger)
(ID:Location)		 017_E03.ab1: 66851-68260 , 035_E17.ab1: 66925-68269 , 043_A14.ab1: 66914-68260 , 048_A15.ab1: 66914-68268 , 049_G16.ab1: 66914-68260 , 051_F21.ab1: 66925-68260

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_040 0.0 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
2 Hb_007924_020 0.062318771 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_000429_170 0.0877250871 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
4 Hb_000922_270 0.0970532802 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
5 Hb_009404_020 0.0988043556 - - conserved hypothetical protein [Ricinus communis]
6 Hb_034299_060 0.0995286364 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
7 Hb_005000_070 0.1028078512 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
8 Hb_000051_040 0.1043761046 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
9 Hb_008289_060 0.1046383669 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
10 Hb_003151_050 0.1072561645 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
11 Hb_003408_020 0.1118988223 - - hypothetical protein RCOM_0453040 [Ricinus communis]
12 Hb_001439_170 0.1121026582 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
13 Hb_044662_070 0.1123268006 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
14 Hb_004951_040 0.1138434617 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
15 Hb_002897_060 0.1144135999 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
16 Hb_183612_100 0.1150222011 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
17 Hb_001711_030 0.116421111 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
18 Hb_000665_040 0.1164476877 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
19 Hb_003408_030 0.1171082039 - - PREDICTED: protein YIF1B [Jatropha curcas]
20 Hb_000861_040 0.118317951 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000622_040 Hb_000622_040 Hb_007924_020 Hb_007924_020 Hb_000622_040--Hb_007924_020 Hb_000429_170 Hb_000429_170 Hb_000622_040--Hb_000429_170 Hb_000922_270 Hb_000922_270 Hb_000622_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000622_040--Hb_009404_020 Hb_034299_060 Hb_034299_060 Hb_000622_040--Hb_034299_060 Hb_005000_070 Hb_005000_070 Hb_000622_040--Hb_005000_070 Hb_044662_070 Hb_044662_070 Hb_007924_020--Hb_044662_070 Hb_008289_060 Hb_008289_060 Hb_007924_020--Hb_008289_060 Hb_007924_020--Hb_000429_170 Hb_003408_030 Hb_003408_030 Hb_007924_020--Hb_003408_030 Hb_003376_120 Hb_003376_120 Hb_007924_020--Hb_003376_120 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_000429_170--Hb_034299_060 Hb_003151_050 Hb_003151_050 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_003408_020 Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_001711_030 Hb_001711_030 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080 Hb_011465_040 Hb_011465_040 Hb_009404_020--Hb_011465_040 Hb_001616_060 Hb_001616_060 Hb_009404_020--Hb_001616_060 Hb_000487_310 Hb_000487_310 Hb_009404_020--Hb_000487_310 Hb_004108_230 Hb_004108_230 Hb_009404_020--Hb_004108_230 Hb_009404_020--Hb_000922_270 Hb_002918_200 Hb_002918_200 Hb_009404_020--Hb_002918_200 Hb_054127_040 Hb_054127_040 Hb_034299_060--Hb_054127_040 Hb_034299_060--Hb_003151_050 Hb_006824_020 Hb_006824_020 Hb_034299_060--Hb_006824_020 Hb_005357_150 Hb_005357_150 Hb_034299_060--Hb_005357_150 Hb_000230_380 Hb_000230_380 Hb_005000_070--Hb_000230_380 Hb_005000_070--Hb_000429_170 Hb_005000_070--Hb_007924_020 Hb_000061_300 Hb_000061_300 Hb_005000_070--Hb_000061_300 Hb_002056_060 Hb_002056_060 Hb_005000_070--Hb_002056_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.935 25.0838 20.2047 10.3149 85.7586 63.1861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
185.921 143.521 174.698 52.3704 34.6769

CAGE analysis