Hb_000622_100

Information

Type -
Description -
Location Contig622: 118488-118823
Sequence    

Annotation

kegg
ID pop:POPTR_0004s15850g
description POPTRDRAFT_759634; hypothetical protein
nr
ID XP_012083253.1
description PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9H0N0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15850g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51555: 118154-119431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_100 0.0 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
2 Hb_007632_250 0.0952376997 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011174_010 0.1008666096 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
4 Hb_073367_010 0.1017240521 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
5 Hb_000189_530 0.1020784457 - - 40S ribosomal protein S24B [Hevea brasiliensis]
6 Hb_000617_320 0.1051998362 - - 40S ribosomal protein S21B [Hevea brasiliensis]
7 Hb_119583_010 0.1056433278 - - 60S ribosomal protein L12A [Hevea brasiliensis]
8 Hb_003633_130 0.1079521148 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
9 Hb_005735_030 0.1108331872 - - conserved hypothetical protein [Ricinus communis]
10 Hb_034585_030 0.110955823 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
11 Hb_007632_090 0.111501511 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
12 Hb_000752_060 0.1117829232 - - expressed protein, putative [Ricinus communis]
13 Hb_002235_150 0.112110778 - - -
14 Hb_000107_140 0.1175628159 - - -
15 Hb_000621_060 0.1194751457 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
16 Hb_003106_130 0.1197704829 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
17 Hb_003874_020 0.1226567971 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
18 Hb_007166_050 0.122948769 - - -
19 Hb_004607_120 0.1230857413 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
20 Hb_004102_190 0.1254418963 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000622_100 Hb_000622_100 Hb_007632_250 Hb_007632_250 Hb_000622_100--Hb_007632_250 Hb_011174_010 Hb_011174_010 Hb_000622_100--Hb_011174_010 Hb_073367_010 Hb_073367_010 Hb_000622_100--Hb_073367_010 Hb_000189_530 Hb_000189_530 Hb_000622_100--Hb_000189_530 Hb_000617_320 Hb_000617_320 Hb_000622_100--Hb_000617_320 Hb_119583_010 Hb_119583_010 Hb_000622_100--Hb_119583_010 Hb_007632_250--Hb_000617_320 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_007632_250--Hb_119583_010 Hb_004502_030 Hb_004502_030 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_002272_260 Hb_002272_260 Hb_011174_010--Hb_002272_260 Hb_004117_180 Hb_004117_180 Hb_011174_010--Hb_004117_180 Hb_011016_090 Hb_011016_090 Hb_011174_010--Hb_011016_090 Hb_011174_010--Hb_073367_010 Hb_000771_100 Hb_000771_100 Hb_011174_010--Hb_000771_100 Hb_000065_080 Hb_000065_080 Hb_073367_010--Hb_000065_080 Hb_004712_180 Hb_004712_180 Hb_073367_010--Hb_004712_180 Hb_003106_130 Hb_003106_130 Hb_073367_010--Hb_003106_130 Hb_002235_150 Hb_002235_150 Hb_073367_010--Hb_002235_150 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000189_530--Hb_000617_320 Hb_000366_100 Hb_000366_100 Hb_000189_530--Hb_000366_100 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_007166_050 Hb_007166_050 Hb_000189_530--Hb_007166_050 Hb_000193_350 Hb_000193_350 Hb_000189_530--Hb_000193_350 Hb_000617_320--Hb_007166_050 Hb_000617_320--Hb_001019_090 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_003633_130 Hb_003633_130 Hb_119583_010--Hb_003633_130 Hb_119583_010--Hb_003106_130 Hb_119583_010--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_119583_010--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_119583_010--Hb_002997_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.424 17.2261 14.8686 44.3344 108.863 166.57
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.939 117.127 27.3323 24.9878 5.15759

CAGE analysis