Hb_000622_130

Information

Type -
Description -
Location Contig622: 127953-135691
Sequence    

Annotation

kegg
ID vvi:100267092
description tubulin gamma-1 chain-like
nr
ID XP_010661882.1
description PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
swissprot
ID P38557
description Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=1 SV=1
trembl
ID D7UCL1
description Tubulin gamma chain OS=Vitis vinifera GN=VIT_15s0046g01350 PE=3 SV=1
Gene Ontology
ID GO:0000930
description tubulin gamma-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51559: 133499-133754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_130 0.0 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
2 Hb_000152_600 0.0987719431 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
3 Hb_001191_080 0.1012740614 - - protein with unknown function [Ricinus communis]
4 Hb_000916_070 0.1013321132 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
5 Hb_000832_190 0.1080542275 - - Rab3 [Hevea brasiliensis]
6 Hb_005914_110 0.1081466749 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
7 Hb_000926_200 0.1082745209 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
8 Hb_007850_030 0.1106143966 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
9 Hb_007741_130 0.1109581533 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
10 Hb_000062_330 0.1144992579 - - unknown [Lotus japonicus]
11 Hb_002960_150 0.1145067655 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
12 Hb_053709_050 0.1190001004 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_013394_050 0.1191145755 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
14 Hb_004567_010 0.1194142979 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
15 Hb_004984_030 0.1224275005 - - protein with unknown function [Ricinus communis]
16 Hb_000069_640 0.1241449675 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
17 Hb_000733_200 0.1243233659 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
18 Hb_000072_300 0.12467322 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
19 Hb_032202_100 0.1262257157 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
20 Hb_000282_050 0.1265537004 - - calcineurin B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000622_130 Hb_000622_130 Hb_000152_600 Hb_000152_600 Hb_000622_130--Hb_000152_600 Hb_001191_080 Hb_001191_080 Hb_000622_130--Hb_001191_080 Hb_000916_070 Hb_000916_070 Hb_000622_130--Hb_000916_070 Hb_000832_190 Hb_000832_190 Hb_000622_130--Hb_000832_190 Hb_005914_110 Hb_005914_110 Hb_000622_130--Hb_005914_110 Hb_000926_200 Hb_000926_200 Hb_000622_130--Hb_000926_200 Hb_081599_010 Hb_081599_010 Hb_000152_600--Hb_081599_010 Hb_005993_010 Hb_005993_010 Hb_000152_600--Hb_005993_010 Hb_000072_300 Hb_000072_300 Hb_000152_600--Hb_000072_300 Hb_019181_030 Hb_019181_030 Hb_000152_600--Hb_019181_030 Hb_000130_270 Hb_000130_270 Hb_000152_600--Hb_000130_270 Hb_000069_640 Hb_000069_640 Hb_000152_600--Hb_000069_640 Hb_007741_130 Hb_007741_130 Hb_001191_080--Hb_007741_130 Hb_004712_190 Hb_004712_190 Hb_001191_080--Hb_004712_190 Hb_021576_150 Hb_021576_150 Hb_001191_080--Hb_021576_150 Hb_001191_080--Hb_000926_200 Hb_014231_020 Hb_014231_020 Hb_001191_080--Hb_014231_020 Hb_005245_120 Hb_005245_120 Hb_001191_080--Hb_005245_120 Hb_002960_150 Hb_002960_150 Hb_000916_070--Hb_002960_150 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_124373_010 Hb_124373_010 Hb_000916_070--Hb_124373_010 Hb_010368_050 Hb_010368_050 Hb_000916_070--Hb_010368_050 Hb_003001_090 Hb_003001_090 Hb_000916_070--Hb_003001_090 Hb_004984_030 Hb_004984_030 Hb_000832_190--Hb_004984_030 Hb_000429_040 Hb_000429_040 Hb_000832_190--Hb_000429_040 Hb_004041_020 Hb_004041_020 Hb_000832_190--Hb_004041_020 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000413_240 Hb_000413_240 Hb_000832_190--Hb_000413_240 Hb_000365_270 Hb_000365_270 Hb_005914_110--Hb_000365_270 Hb_053709_050 Hb_053709_050 Hb_005914_110--Hb_053709_050 Hb_000723_230 Hb_000723_230 Hb_005914_110--Hb_000723_230 Hb_005914_110--Hb_000926_200 Hb_005867_090 Hb_005867_090 Hb_005914_110--Hb_005867_090 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_000926_200--Hb_004984_030 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04191 2.23273 6.71028 7.41099 1.40724 1.92966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21077 3.92217 2.8995 1.86606 1.73759

CAGE analysis