Hb_000622_180

Information

Type -
Description -
Location Contig622: 155776-163472
Sequence    

Annotation

kegg
ID mus:103981101
description ubiquitin-conjugating enzyme E2 28-like
nr
ID XP_002532653.1
description ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
swissprot
ID P35131
description Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1
trembl
ID M0SMQ5
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1
Gene Ontology
ID GO:0005622
description ubiquitin-conjugating enzyme e2 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51562: 155926-163503 , PASA_asmbl_51563: 155799-156418 , PASA_asmbl_51564: 156691-156970 , PASA_asmbl_51565: 160815-163488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_180 0.0 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
2 Hb_000193_110 0.0626978899 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
3 Hb_029388_020 0.0764547765 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001195_480 0.0807422424 - - cop9 complex subunit, putative [Ricinus communis]
5 Hb_000236_390 0.0865565488 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
6 Hb_021068_040 0.0888096579 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
7 Hb_002685_040 0.0894604373 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
8 Hb_004453_170 0.0905407104 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
9 Hb_000010_110 0.0924385114 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
10 Hb_001534_120 0.0929795761 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
11 Hb_000529_030 0.096722453 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000205_090 0.0972258803 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
13 Hb_011512_070 0.097386612 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
14 Hb_000264_210 0.0989865322 - - tfiih, polypeptide, putative [Ricinus communis]
15 Hb_012565_070 0.0992757135 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_000217_030 0.1007718772 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
17 Hb_000115_220 0.1007946951 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
18 Hb_001832_060 0.1011025045 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
19 Hb_000000_210 0.1021477305 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
20 Hb_000260_550 0.1023850379 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000622_180 Hb_000622_180 Hb_000193_110 Hb_000193_110 Hb_000622_180--Hb_000193_110 Hb_029388_020 Hb_029388_020 Hb_000622_180--Hb_029388_020 Hb_001195_480 Hb_001195_480 Hb_000622_180--Hb_001195_480 Hb_000236_390 Hb_000236_390 Hb_000622_180--Hb_000236_390 Hb_021068_040 Hb_021068_040 Hb_000622_180--Hb_021068_040 Hb_002685_040 Hb_002685_040 Hb_000622_180--Hb_002685_040 Hb_000115_220 Hb_000115_220 Hb_000193_110--Hb_000115_220 Hb_011512_070 Hb_011512_070 Hb_000193_110--Hb_011512_070 Hb_000457_180 Hb_000457_180 Hb_000193_110--Hb_000457_180 Hb_012565_070 Hb_012565_070 Hb_000193_110--Hb_012565_070 Hb_000193_110--Hb_021068_040 Hb_000684_380 Hb_000684_380 Hb_029388_020--Hb_000684_380 Hb_003125_200 Hb_003125_200 Hb_029388_020--Hb_003125_200 Hb_005365_030 Hb_005365_030 Hb_029388_020--Hb_005365_030 Hb_002995_020 Hb_002995_020 Hb_029388_020--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_029388_020--Hb_001691_140 Hb_027472_040 Hb_027472_040 Hb_029388_020--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_000236_390--Hb_000529_030 Hb_000236_390--Hb_001195_480 Hb_000633_020 Hb_000633_020 Hb_000236_390--Hb_000633_020 Hb_000236_390--Hb_004453_170 Hb_001016_150 Hb_001016_150 Hb_000236_390--Hb_001016_150 Hb_000805_240 Hb_000805_240 Hb_021068_040--Hb_000805_240 Hb_005846_040 Hb_005846_040 Hb_021068_040--Hb_005846_040 Hb_006615_240 Hb_006615_240 Hb_021068_040--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_021068_040--Hb_000205_090 Hb_003582_060 Hb_003582_060 Hb_021068_040--Hb_003582_060 Hb_003151_040 Hb_003151_040 Hb_021068_040--Hb_003151_040 Hb_005186_050 Hb_005186_050 Hb_002685_040--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_002685_040--Hb_003607_150 Hb_001832_060 Hb_001832_060 Hb_002685_040--Hb_001832_060 Hb_001662_070 Hb_001662_070 Hb_002685_040--Hb_001662_070 Hb_004195_270 Hb_004195_270 Hb_002685_040--Hb_004195_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.796 64.5047 114.567 73.3554 64.7439 42.2039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.696 157.711 73.9885 58.9868 39.9903

CAGE analysis