Hb_000625_020

Information

Type -
Description -
Location Contig625: 7777-10713
Sequence    

Annotation

kegg
ID rcu:RCOM_0572500
description hypothetical protein
nr
ID XP_002529641.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUH2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0572500 PE=4 SV=1
Gene Ontology
ID GO:0016740
description pyridoxal-phosphate-dependent serine hydroxymethyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51631: 7355-8108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000625_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004324_280 0.0850442663 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
3 Hb_109842_010 0.0888661982 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
4 Hb_000165_030 0.0983419792 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
5 Hb_000120_240 0.0999628361 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
6 Hb_003609_040 0.1010600491 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
7 Hb_000162_090 0.1031598952 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
8 Hb_000204_040 0.10862528 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
9 Hb_005306_110 0.1106887067 - - casein kinase, putative [Ricinus communis]
10 Hb_009411_020 0.1135574683 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
11 Hb_009404_010 0.1140502203 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
12 Hb_005432_010 0.1165877872 - - -
13 Hb_000392_070 0.1165962968 - - catalytic, putative [Ricinus communis]
14 Hb_001936_050 0.117483844 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
15 Hb_057183_040 0.1175308645 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
16 Hb_002215_050 0.11801512 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
17 Hb_005237_060 0.1183580399 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
18 Hb_000943_070 0.1184733888 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
19 Hb_012977_010 0.1185203232 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
20 Hb_001913_010 0.1185780175 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]

Gene co-expression network

sample Hb_000625_020 Hb_000625_020 Hb_004324_280 Hb_004324_280 Hb_000625_020--Hb_004324_280 Hb_109842_010 Hb_109842_010 Hb_000625_020--Hb_109842_010 Hb_000165_030 Hb_000165_030 Hb_000625_020--Hb_000165_030 Hb_000120_240 Hb_000120_240 Hb_000625_020--Hb_000120_240 Hb_003609_040 Hb_003609_040 Hb_000625_020--Hb_003609_040 Hb_000162_090 Hb_000162_090 Hb_000625_020--Hb_000162_090 Hb_000186_280 Hb_000186_280 Hb_004324_280--Hb_000186_280 Hb_001969_040 Hb_001969_040 Hb_004324_280--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_004324_280--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_004324_280--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_004324_280--Hb_000462_150 Hb_001141_330 Hb_001141_330 Hb_004324_280--Hb_001141_330 Hb_005306_110 Hb_005306_110 Hb_109842_010--Hb_005306_110 Hb_109842_010--Hb_000165_030 Hb_009411_020 Hb_009411_020 Hb_109842_010--Hb_009411_020 Hb_001504_150 Hb_001504_150 Hb_109842_010--Hb_001504_150 Hb_168707_030 Hb_168707_030 Hb_109842_010--Hb_168707_030 Hb_000165_030--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000165_030--Hb_000749_150 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000165_030--Hb_000905_190 Hb_000156_140 Hb_000156_140 Hb_000165_030--Hb_000156_140 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000956_130 Hb_000956_130 Hb_000120_240--Hb_000956_130 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_000001_020 Hb_000001_020 Hb_003609_040--Hb_000001_020 Hb_007547_010 Hb_007547_010 Hb_003609_040--Hb_007547_010 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_000030_010 Hb_000030_010 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003297_030 Hb_003297_030 Hb_003609_040--Hb_003297_030 Hb_001511_020 Hb_001511_020 Hb_000162_090--Hb_001511_020 Hb_003642_060 Hb_003642_060 Hb_000162_090--Hb_003642_060 Hb_000803_150 Hb_000803_150 Hb_000162_090--Hb_000803_150 Hb_000089_220 Hb_000089_220 Hb_000162_090--Hb_000089_220 Hb_001913_010 Hb_001913_010 Hb_000162_090--Hb_001913_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.037 4.80592 2.93881 3.4063 9.04919 12.7117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.60353 6.43986 8.49359 0.793572 2.16345

CAGE analysis