Hb_000625_060

Information

Type -
Description -
Location Contig625: 58026-59858
Sequence    

Annotation

kegg
ID rcu:RCOM_0431130
description Protein P21, putative
nr
ID XP_002533803.1
description Protein P21, putative [Ricinus communis]
swissprot
ID P83332
description Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1
trembl
ID B9T6D4
description Protein P21, putative OS=Ricinus communis GN=RCOM_0431130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51636: 58579-59391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000625_060 0.0 - - Protein P21, putative [Ricinus communis]
2 Hb_005186_090 0.1059466714 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_010578_050 0.119864152 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
4 Hb_004657_040 0.127067225 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
5 Hb_001514_210 0.1380009247 - - hypothetical protein VITISV_012133 [Vitis vinifera]
6 Hb_000030_260 0.1423461944 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
7 Hb_162286_030 0.1466273135 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
8 Hb_002269_030 0.1486226877 - - hypothetical protein CISIN_1g018400mg [Citrus sinensis]
9 Hb_002783_320 0.1500095628 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
10 Hb_000181_160 0.1543071461 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
11 Hb_003050_050 0.1561889126 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
12 Hb_000836_390 0.1563666461 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
13 Hb_008215_010 0.158433801 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001221_480 0.1592970861 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_011970_040 0.1617296057 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001621_020 0.1619714695 - - -
17 Hb_002686_390 0.1623814944 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
18 Hb_000723_120 0.1661067713 - - PREDICTED: UDP-glycosyltransferase 86A1 [Jatropha curcas]
19 Hb_001454_410 0.1692040808 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
20 Hb_001723_070 0.1693721168 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]

Gene co-expression network

sample Hb_000625_060 Hb_000625_060 Hb_005186_090 Hb_005186_090 Hb_000625_060--Hb_005186_090 Hb_010578_050 Hb_010578_050 Hb_000625_060--Hb_010578_050 Hb_004657_040 Hb_004657_040 Hb_000625_060--Hb_004657_040 Hb_001514_210 Hb_001514_210 Hb_000625_060--Hb_001514_210 Hb_000030_260 Hb_000030_260 Hb_000625_060--Hb_000030_260 Hb_162286_030 Hb_162286_030 Hb_000625_060--Hb_162286_030 Hb_005186_090--Hb_010578_050 Hb_005186_090--Hb_000030_260 Hb_000130_080 Hb_000130_080 Hb_005186_090--Hb_000130_080 Hb_004286_030 Hb_004286_030 Hb_005186_090--Hb_004286_030 Hb_001842_060 Hb_001842_060 Hb_005186_090--Hb_001842_060 Hb_002783_320 Hb_002783_320 Hb_010578_050--Hb_002783_320 Hb_010578_050--Hb_000030_260 Hb_000836_390 Hb_000836_390 Hb_010578_050--Hb_000836_390 Hb_000120_070 Hb_000120_070 Hb_010578_050--Hb_000120_070 Hb_000181_160 Hb_000181_160 Hb_004657_040--Hb_000181_160 Hb_002686_390 Hb_002686_390 Hb_004657_040--Hb_002686_390 Hb_001408_050 Hb_001408_050 Hb_004657_040--Hb_001408_050 Hb_004657_040--Hb_001514_210 Hb_009823_010 Hb_009823_010 Hb_004657_040--Hb_009823_010 Hb_012753_200 Hb_012753_200 Hb_001514_210--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_001514_210--Hb_000085_230 Hb_000579_180 Hb_000579_180 Hb_001514_210--Hb_000579_180 Hb_002805_150 Hb_002805_150 Hb_001514_210--Hb_002805_150 Hb_001514_210--Hb_002686_390 Hb_003031_030 Hb_003031_030 Hb_001514_210--Hb_003031_030 Hb_011791_010 Hb_011791_010 Hb_000030_260--Hb_011791_010 Hb_000030_260--Hb_002783_320 Hb_000223_050 Hb_000223_050 Hb_000030_260--Hb_000223_050 Hb_001838_010 Hb_001838_010 Hb_000030_260--Hb_001838_010 Hb_000723_120 Hb_000723_120 Hb_000030_260--Hb_000723_120 Hb_001723_070 Hb_001723_070 Hb_162286_030--Hb_001723_070 Hb_001621_020 Hb_001621_020 Hb_162286_030--Hb_001621_020 Hb_002110_060 Hb_002110_060 Hb_162286_030--Hb_002110_060 Hb_000009_130 Hb_000009_130 Hb_162286_030--Hb_000009_130 Hb_010174_170 Hb_010174_170 Hb_162286_030--Hb_010174_170 Hb_008215_010 Hb_008215_010 Hb_162286_030--Hb_008215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142191 6.6066 2.62851 1.38091 0.173338 0.166116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136664 0.0806342 0.201363 8.43145 0.280194

CAGE analysis