Hb_000626_040

Information

Type -
Description -
Location Contig626: 111904-112470
Sequence    

Annotation

kegg
ID rcu:RCOM_1121860
description TATA-box binding protein, putative (EC:1.3.1.74)
nr
ID XP_012082253.1
description PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
swissprot
ID Q42808
description TATA-box-binding protein OS=Glycine max GN=TBP1 PE=2 SV=1
trembl
ID A0A067LAC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09660 PE=3 SV=1
Gene Ontology
ID GO:0005634
description tata-box-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000626_040 0.0 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
2 Hb_002660_060 0.2653687907 - - PREDICTED: uncharacterized protein LOC105642215 [Jatropha curcas]
3 Hb_005736_070 0.27930101 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
4 Hb_038044_020 0.2822783523 - - -
5 Hb_004462_020 0.2966409268 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
6 Hb_000840_040 0.3026897009 - - monoxygenase, putative [Ricinus communis]
7 Hb_002656_010 0.3032439313 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
8 Hb_001825_020 0.3051549718 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_003206_080 0.3217363957 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
10 Hb_011663_020 0.3228571633 - - Putative retrotransposon protein, identical [Solanum demissum]
11 Hb_006478_170 0.3242188118 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
12 Hb_000649_180 0.3251094888 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
13 Hb_002291_020 0.3275906849 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004846_150 0.3293381438 - - hypothetical protein JCGZ_26968 [Jatropha curcas]
15 Hb_000554_030 0.3312671499 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
16 Hb_126103_010 0.3313264972 - - Phosphoprotein phosphatase [Theobroma cacao]
17 Hb_000676_270 0.3325502306 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
18 Hb_007042_010 0.3360335492 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_001568_110 0.3369003114 - - BnaA02g12660D [Brassica napus]
20 Hb_001829_020 0.3408560459 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]

Gene co-expression network

sample Hb_000626_040 Hb_000626_040 Hb_002660_060 Hb_002660_060 Hb_000626_040--Hb_002660_060 Hb_005736_070 Hb_005736_070 Hb_000626_040--Hb_005736_070 Hb_038044_020 Hb_038044_020 Hb_000626_040--Hb_038044_020 Hb_004462_020 Hb_004462_020 Hb_000626_040--Hb_004462_020 Hb_000840_040 Hb_000840_040 Hb_000626_040--Hb_000840_040 Hb_002656_010 Hb_002656_010 Hb_000626_040--Hb_002656_010 Hb_002805_020 Hb_002805_020 Hb_002660_060--Hb_002805_020 Hb_000671_160 Hb_000671_160 Hb_002660_060--Hb_000671_160 Hb_000671_170 Hb_000671_170 Hb_002660_060--Hb_000671_170 Hb_002486_010 Hb_002486_010 Hb_002660_060--Hb_002486_010 Hb_000676_270 Hb_000676_270 Hb_002660_060--Hb_000676_270 Hb_000554_030 Hb_000554_030 Hb_002660_060--Hb_000554_030 Hb_011214_140 Hb_011214_140 Hb_005736_070--Hb_011214_140 Hb_001009_110 Hb_001009_110 Hb_005736_070--Hb_001009_110 Hb_006501_170 Hb_006501_170 Hb_005736_070--Hb_006501_170 Hb_008948_080 Hb_008948_080 Hb_005736_070--Hb_008948_080 Hb_001825_020 Hb_001825_020 Hb_005736_070--Hb_001825_020 Hb_010620_020 Hb_010620_020 Hb_005736_070--Hb_010620_020 Hb_005896_010 Hb_005896_010 Hb_038044_020--Hb_005896_010 Hb_001206_010 Hb_001206_010 Hb_038044_020--Hb_001206_010 Hb_038044_020--Hb_000840_040 Hb_007042_010 Hb_007042_010 Hb_038044_020--Hb_007042_010 Hb_003206_080 Hb_003206_080 Hb_038044_020--Hb_003206_080 Hb_002217_070 Hb_002217_070 Hb_004462_020--Hb_002217_070 Hb_002600_010 Hb_002600_010 Hb_004462_020--Hb_002600_010 Hb_000603_120 Hb_000603_120 Hb_004462_020--Hb_000603_120 Hb_001365_050 Hb_001365_050 Hb_004462_020--Hb_001365_050 Hb_001754_200 Hb_001754_200 Hb_004462_020--Hb_001754_200 Hb_003106_210 Hb_003106_210 Hb_004462_020--Hb_003106_210 Hb_003185_100 Hb_003185_100 Hb_000840_040--Hb_003185_100 Hb_149515_010 Hb_149515_010 Hb_000840_040--Hb_149515_010 Hb_000141_010 Hb_000141_010 Hb_000840_040--Hb_000141_010 Hb_159198_010 Hb_159198_010 Hb_000840_040--Hb_159198_010 Hb_002043_010 Hb_002043_010 Hb_000840_040--Hb_002043_010 Hb_001485_010 Hb_001485_010 Hb_000840_040--Hb_001485_010 Hb_002656_010--Hb_005896_010 Hb_002656_010--Hb_149515_010 Hb_000215_340 Hb_000215_340 Hb_002656_010--Hb_000215_340 Hb_002656_010--Hb_000840_040 Hb_001373_010 Hb_001373_010 Hb_002656_010--Hb_001373_010 Hb_002656_010--Hb_159198_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.0093 0 0.143701 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0864181 0.599278 0.462378 0.331302

CAGE analysis