Hb_000627_050

Information

Type -
Description -
Location Contig627: 84325-92336
Sequence    

Annotation

kegg
ID rcu:RCOM_1678460
description hypothetical protein
nr
ID XP_012070695.1
description PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10150 PE=4 SV=1
Gene Ontology
ID GO:0005976
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51695: 84998-92248 , PASA_asmbl_51696: 84385-91330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_050 0.0 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
2 Hb_000212_410 0.0441091347 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
3 Hb_000703_120 0.0483186597 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
4 Hb_009788_020 0.0614327244 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
5 Hb_007270_020 0.0706022492 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
6 Hb_069696_020 0.0719710158 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
7 Hb_000977_020 0.0749671796 - - beta-hexosaminidase, putative [Ricinus communis]
8 Hb_002724_010 0.0769597634 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
9 Hb_131876_010 0.0790808258 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
10 Hb_060253_010 0.0792527801 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
11 Hb_001098_040 0.0803025717 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
12 Hb_001051_010 0.0812192771 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
13 Hb_002890_200 0.0816613103 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
14 Hb_001417_060 0.0854258746 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
15 Hb_001248_070 0.0895517483 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
16 Hb_002073_150 0.0896292678 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
17 Hb_000318_010 0.0937185547 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
18 Hb_000023_130 0.0956675947 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
19 Hb_001629_120 0.0970677537 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
20 Hb_000076_060 0.0986013446 - - hypothetical protein RCOM_0586940 [Ricinus communis]

Gene co-expression network

sample Hb_000627_050 Hb_000627_050 Hb_000212_410 Hb_000212_410 Hb_000627_050--Hb_000212_410 Hb_000703_120 Hb_000703_120 Hb_000627_050--Hb_000703_120 Hb_009788_020 Hb_009788_020 Hb_000627_050--Hb_009788_020 Hb_007270_020 Hb_007270_020 Hb_000627_050--Hb_007270_020 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_000212_410--Hb_009788_020 Hb_000212_410--Hb_000703_120 Hb_000212_410--Hb_007270_020 Hb_002724_010 Hb_002724_010 Hb_000212_410--Hb_002724_010 Hb_060253_010 Hb_060253_010 Hb_000212_410--Hb_060253_010 Hb_000703_120--Hb_009788_020 Hb_002890_200 Hb_002890_200 Hb_000703_120--Hb_002890_200 Hb_000703_120--Hb_002724_010 Hb_000703_120--Hb_007270_020 Hb_009788_020--Hb_007270_020 Hb_009788_020--Hb_060253_010 Hb_001488_420 Hb_001488_420 Hb_009788_020--Hb_001488_420 Hb_007270_020--Hb_060253_010 Hb_003873_020 Hb_003873_020 Hb_007270_020--Hb_003873_020 Hb_131876_010 Hb_131876_010 Hb_069696_020--Hb_131876_010 Hb_002073_150 Hb_002073_150 Hb_069696_020--Hb_002073_150 Hb_000984_160 Hb_000984_160 Hb_069696_020--Hb_000984_160 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460 Hb_030827_010 Hb_030827_010 Hb_069696_020--Hb_030827_010 Hb_000977_020--Hb_002724_010 Hb_000977_020--Hb_000212_410 Hb_001098_040 Hb_001098_040 Hb_000977_020--Hb_001098_040 Hb_009421_070 Hb_009421_070 Hb_000977_020--Hb_009421_070 Hb_000977_020--Hb_000703_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0694812 8.81943 33.7204 31.1436 0.174601 0.105078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116858 0.0735697 0.0705829 7.35271 46.8551

CAGE analysis