Hb_000627_080

Information

Type transcription factor
Description TF Family: C3H
Location Contig627: 108836-112717
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07380g
description POPTRDRAFT_244304; hypothetical protein
nr
ID XP_012083498.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14472 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51697: 108849-112647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_080 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_000390_070 0.0563739485 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
3 Hb_004055_040 0.0698116485 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
4 Hb_000244_250 0.0803352249 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
5 Hb_001930_010 0.0803535311 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
6 Hb_002255_070 0.0812272124 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
7 Hb_000915_050 0.0818384977 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005730_030 0.0819503591 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
9 Hb_017075_010 0.0842303694 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
10 Hb_000230_080 0.0851795403 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_001322_210 0.086285062 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
12 Hb_123777_030 0.087199277 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
13 Hb_000005_380 0.0879337362 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
14 Hb_126643_010 0.0884027578 - - Protein transport protein Sec24C, putative [Ricinus communis]
15 Hb_033834_010 0.0903355335 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_022408_010 0.0913706089 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
17 Hb_001797_050 0.0920565293 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
18 Hb_002928_060 0.0922422812 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
19 Hb_003216_080 0.0931768906 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
20 Hb_140171_010 0.0945235 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000627_080 Hb_000627_080 Hb_000390_070 Hb_000390_070 Hb_000627_080--Hb_000390_070 Hb_004055_040 Hb_004055_040 Hb_000627_080--Hb_004055_040 Hb_000244_250 Hb_000244_250 Hb_000627_080--Hb_000244_250 Hb_001930_010 Hb_001930_010 Hb_000627_080--Hb_001930_010 Hb_002255_070 Hb_002255_070 Hb_000627_080--Hb_002255_070 Hb_000915_050 Hb_000915_050 Hb_000627_080--Hb_000915_050 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000390_070--Hb_000244_250 Hb_000390_070--Hb_004055_040 Hb_002928_060 Hb_002928_060 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_001871_040 Hb_001871_040 Hb_004055_040--Hb_001871_040 Hb_004055_040--Hb_000244_250 Hb_004055_040--Hb_000915_050 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000244_250--Hb_000915_050 Hb_000244_250--Hb_007586_030 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_124315_020 Hb_124315_020 Hb_001930_010--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_001930_010--Hb_000514_060 Hb_126643_010 Hb_126643_010 Hb_002255_070--Hb_126643_010 Hb_002255_070--Hb_000005_380 Hb_002255_070--Hb_000390_070 Hb_002255_070--Hb_001930_010 Hb_002255_070--Hb_000514_060 Hb_000915_050--Hb_003362_040 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1041 12.2832 4.66347 5.02863 18.1285 25.7594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.02454 5.59579 18.6359 11.7703 5.89149

CAGE analysis