Hb_000627_110

Information

Type -
Description -
Location Contig627: 121922-126315
Sequence    

Annotation

kegg
ID rcu:RCOM_0522740
description cellulose synthase, putative (EC:2.4.1.12)
nr
ID XP_002522779.1
description cellulose synthase, putative [Ricinus communis]
swissprot
ID Q8VZK9
description Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=2 SV=1
trembl
ID B9S9W0
description Cellulose synthase, putative OS=Ricinus communis GN=RCOM_0522740 PE=4 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase-like protein e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51701: 122007-123311 , PASA_asmbl_51702: 123376-123966 , PASA_asmbl_51703: 123985-125220 , PASA_asmbl_51704: 125229-126240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_110 0.0 - - cellulose synthase, putative [Ricinus communis]
2 Hb_000199_090 0.0453904559 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
3 Hb_004896_030 0.050005912 - - hypothetical protein VITISV_007475 [Vitis vinifera]
4 Hb_014510_030 0.055189496 - - hypothetical protein VITISV_027576 [Vitis vinifera]
5 Hb_000415_080 0.0783206437 - - -
6 Hb_040245_010 0.0861211784 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
7 Hb_029386_010 0.0915882076 - - RALF-LIKE 27 family protein [Populus trichocarpa]
8 Hb_002740_060 0.0919151011 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
9 Hb_003073_030 0.0942292594 - - conserved hypothetical protein [Ricinus communis]
10 Hb_102761_010 0.1054882236 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
11 Hb_003358_030 0.108213472 - - ankyrin-kinase, putative [Ricinus communis]
12 Hb_114893_010 0.1118823381 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
13 Hb_000223_090 0.1166883739 - - Blue copper protein precursor, putative [Ricinus communis]
14 Hb_048755_030 0.1212308744 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_004459_050 0.1222948742 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010381_080 0.1254877322 - - cytochrome P450, putative [Ricinus communis]
17 Hb_054865_040 0.1285222858 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
18 Hb_077151_010 0.1300323836 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_002111_010 0.1306086768 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
20 Hb_004242_200 0.13219077 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]

Gene co-expression network

sample Hb_000627_110 Hb_000627_110 Hb_000199_090 Hb_000199_090 Hb_000627_110--Hb_000199_090 Hb_004896_030 Hb_004896_030 Hb_000627_110--Hb_004896_030 Hb_014510_030 Hb_014510_030 Hb_000627_110--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_000627_110--Hb_000415_080 Hb_040245_010 Hb_040245_010 Hb_000627_110--Hb_040245_010 Hb_029386_010 Hb_029386_010 Hb_000627_110--Hb_029386_010 Hb_000199_090--Hb_014510_030 Hb_000199_090--Hb_004896_030 Hb_003073_030 Hb_003073_030 Hb_000199_090--Hb_003073_030 Hb_000199_090--Hb_040245_010 Hb_114893_010 Hb_114893_010 Hb_000199_090--Hb_114893_010 Hb_002740_060 Hb_002740_060 Hb_004896_030--Hb_002740_060 Hb_004896_030--Hb_014510_030 Hb_004896_030--Hb_114893_010 Hb_004896_030--Hb_029386_010 Hb_014510_030--Hb_003073_030 Hb_014510_030--Hb_040245_010 Hb_014510_030--Hb_000415_080 Hb_000415_080--Hb_040245_010 Hb_000415_080--Hb_003073_030 Hb_000415_080--Hb_000199_090 Hb_102761_010 Hb_102761_010 Hb_000415_080--Hb_102761_010 Hb_040245_010--Hb_003073_030 Hb_032016_010 Hb_032016_010 Hb_040245_010--Hb_032016_010 Hb_003358_030 Hb_003358_030 Hb_029386_010--Hb_003358_030 Hb_005539_150 Hb_005539_150 Hb_029386_010--Hb_005539_150 Hb_000477_090 Hb_000477_090 Hb_029386_010--Hb_000477_090 Hb_000223_090 Hb_000223_090 Hb_029386_010--Hb_000223_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0260558 1.0868 8.28771 13.5787 0.00753048 0.0362741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.091316 0.0431128 0 6.11331 52.2293

CAGE analysis