Hb_000627_130

Information

Type -
Description -
Location Contig627: 135991-136422
Sequence    

Annotation

kegg
ID rcu:RCOM_1677910
description Polcalcin Jun o, putative
nr
ID XP_002509541.1
description Polcalcin Jun o, putative [Ricinus communis]
swissprot
ID Q8RYJ8
description Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica GN=CML19 PE=3 SV=1
trembl
ID B9RBK7
description Polcalcin Jun o, putative OS=Ricinus communis GN=RCOM_1677910 PE=4 SV=1
Gene Ontology
ID GO:0005622
description calcium-binding protein cml38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_130 0.0 - - Polcalcin Jun o, putative [Ricinus communis]
2 Hb_007858_020 0.0806046619 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
3 Hb_124953_010 0.0870070161 - - hypothetical protein RCOM_1314600 [Ricinus communis]
4 Hb_029664_010 0.0874540017 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001153_250 0.0878088384 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
6 Hb_109591_010 0.0903784368 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_005054_330 0.0913972664 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
8 Hb_003207_230 0.0988118975 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
9 Hb_000164_160 0.0992300578 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
10 Hb_000808_090 0.099267777 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
11 Hb_002066_050 0.1018944676 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
12 Hb_001619_140 0.111412928 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
13 Hb_002542_030 0.1122935562 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
14 Hb_004612_020 0.1128575595 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
15 Hb_000032_150 0.1164958589 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
16 Hb_000665_090 0.1166075106 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010964_010 0.1178875052 - - -
18 Hb_000959_240 0.12070233 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
19 Hb_004899_010 0.1210163745 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
20 Hb_004032_220 0.1225386695 - - Calmodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000627_130 Hb_000627_130 Hb_007858_020 Hb_007858_020 Hb_000627_130--Hb_007858_020 Hb_124953_010 Hb_124953_010 Hb_000627_130--Hb_124953_010 Hb_029664_010 Hb_029664_010 Hb_000627_130--Hb_029664_010 Hb_001153_250 Hb_001153_250 Hb_000627_130--Hb_001153_250 Hb_109591_010 Hb_109591_010 Hb_000627_130--Hb_109591_010 Hb_005054_330 Hb_005054_330 Hb_000627_130--Hb_005054_330 Hb_007858_020--Hb_005054_330 Hb_004032_220 Hb_004032_220 Hb_007858_020--Hb_004032_220 Hb_007858_020--Hb_124953_010 Hb_000959_240 Hb_000959_240 Hb_007858_020--Hb_000959_240 Hb_000032_150 Hb_000032_150 Hb_007858_020--Hb_000032_150 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010 Hb_003207_230 Hb_003207_230 Hb_124953_010--Hb_003207_230 Hb_124953_010--Hb_000032_150 Hb_124953_010--Hb_005054_330 Hb_047955_010 Hb_047955_010 Hb_124953_010--Hb_047955_010 Hb_124953_010--Hb_004032_220 Hb_029664_010--Hb_001153_250 Hb_006907_020 Hb_006907_020 Hb_029664_010--Hb_006907_020 Hb_029664_010--Hb_007858_020 Hb_008202_020 Hb_008202_020 Hb_029664_010--Hb_008202_020 Hb_029664_010--Hb_124953_010 Hb_006615_060 Hb_006615_060 Hb_001153_250--Hb_006615_060 Hb_001153_250--Hb_000959_240 Hb_001153_250--Hb_007858_020 Hb_001153_250--Hb_003207_230 Hb_002542_030 Hb_002542_030 Hb_109591_010--Hb_002542_030 Hb_109591_010--Hb_005054_330 Hb_109591_010--Hb_007858_020 Hb_000164_160 Hb_000164_160 Hb_109591_010--Hb_000164_160 Hb_109591_010--Hb_124953_010 Hb_005054_330--Hb_167186_010 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_005054_330--Hb_000164_160 Hb_005054_330--Hb_003207_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0731522 147.036 96.102 39.3719 0 0.177812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172644 1.22044 0.221935 0.344102 9.76762

CAGE analysis