Hb_000627_140

Information

Type -
Description -
Location Contig627: 139416-141446
Sequence    

Annotation

kegg
ID rcu:RCOM_1677900
description ATP binding protein, putative (EC:2.7.10.1)
nr
ID XP_002509540.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SGI7
description Protein LYK2 OS=Arabidopsis thaliana GN=LYK2 PE=2 SV=1
trembl
ID B9RBK6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1677900 PE=4 SV=1
Gene Ontology
ID GO:0004714
description protein lyk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_140 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_133646_010 0.1215520414 - - hypothetical protein RCOM_1044030 [Ricinus communis]
3 Hb_004161_010 0.1225053691 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
4 Hb_176149_010 0.1232962049 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
5 Hb_000336_160 0.1256112444 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000656_360 0.1268302099 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
7 Hb_004586_380 0.1295031874 - - purine transporter, putative [Ricinus communis]
8 Hb_002042_190 0.130394265 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
9 Hb_004098_010 0.1316835633 - - -
10 Hb_000369_150 0.1375371555 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
11 Hb_174829_040 0.1390066164 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
12 Hb_000128_010 0.1394010268 - - dimethylaniline monooxygenase, putative [Ricinus communis]
13 Hb_029866_140 0.1401939288 - - PREDICTED: hevamine-A [Jatropha curcas]
14 Hb_000172_300 0.1415462438 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
15 Hb_000417_290 0.1436767069 - - conserved hypothetical protein [Ricinus communis]
16 Hb_119441_010 0.1438459575 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
17 Hb_006351_080 0.1449005188 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
18 Hb_003847_140 0.1471078788 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
19 Hb_004656_030 0.1491076114 - - putative pectin methylesterase family protein [Populus trichocarpa]
20 Hb_048653_040 0.1498040829 - - ankyrin repeat family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000627_140 Hb_000627_140 Hb_133646_010 Hb_133646_010 Hb_000627_140--Hb_133646_010 Hb_004161_010 Hb_004161_010 Hb_000627_140--Hb_004161_010 Hb_176149_010 Hb_176149_010 Hb_000627_140--Hb_176149_010 Hb_000336_160 Hb_000336_160 Hb_000627_140--Hb_000336_160 Hb_000656_360 Hb_000656_360 Hb_000627_140--Hb_000656_360 Hb_004586_380 Hb_004586_380 Hb_000627_140--Hb_004586_380 Hb_133646_010--Hb_176149_010 Hb_133646_010--Hb_000656_360 Hb_004098_010 Hb_004098_010 Hb_133646_010--Hb_004098_010 Hb_027913_010 Hb_027913_010 Hb_133646_010--Hb_027913_010 Hb_000347_370 Hb_000347_370 Hb_133646_010--Hb_000347_370 Hb_001510_050 Hb_001510_050 Hb_133646_010--Hb_001510_050 Hb_002701_140 Hb_002701_140 Hb_004161_010--Hb_002701_140 Hb_001437_200 Hb_001437_200 Hb_004161_010--Hb_001437_200 Hb_004656_030 Hb_004656_030 Hb_004161_010--Hb_004656_030 Hb_004161_010--Hb_027913_010 Hb_004161_010--Hb_000656_360 Hb_003847_140 Hb_003847_140 Hb_004161_010--Hb_003847_140 Hb_176149_010--Hb_004098_010 Hb_000128_010 Hb_000128_010 Hb_176149_010--Hb_000128_010 Hb_176149_010--Hb_004586_380 Hb_006351_080 Hb_006351_080 Hb_176149_010--Hb_006351_080 Hb_000369_150 Hb_000369_150 Hb_176149_010--Hb_000369_150 Hb_176149_010--Hb_000656_360 Hb_174829_040 Hb_174829_040 Hb_000336_160--Hb_174829_040 Hb_007371_010 Hb_007371_010 Hb_000336_160--Hb_007371_010 Hb_001190_020 Hb_001190_020 Hb_000336_160--Hb_001190_020 Hb_000336_160--Hb_001437_200 Hb_000336_160--Hb_004161_010 Hb_000656_360--Hb_003847_140 Hb_029866_140 Hb_029866_140 Hb_000656_360--Hb_029866_140 Hb_066262_010 Hb_066262_010 Hb_000656_360--Hb_066262_010 Hb_119441_010 Hb_119441_010 Hb_000656_360--Hb_119441_010 Hb_000656_360--Hb_000369_150 Hb_004586_380--Hb_006351_080 Hb_004586_380--Hb_000128_010 Hb_004586_380--Hb_004098_010 Hb_004586_380--Hb_000656_360 Hb_004586_380--Hb_119441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0781075 11.868 0.143104 1.61578 0.0835338 0.0264609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0221869 0.104744 0.0662366 1.34025 0

CAGE analysis