Hb_000627_230

Information

Type -
Description -
Location Contig627: 217002-223723
Sequence    

Annotation

kegg
ID rcu:RCOM_1677750
description Uracil phosphoribosyltransferase, putative (EC:2.4.2.9 2.7.1.48)
nr
ID XP_002509535.1
description Uracil phosphoribosyltransferase, putative [Ricinus communis]
swissprot
ID Q9FKS0
description Uridine kinase-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=UKL1 PE=1 SV=1
trembl
ID B9RBK1
description Uridine kinase OS=Ricinus communis GN=RCOM_1677750 PE=3 SV=1
Gene Ontology
ID GO:0004849
description uridine kinase-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51714: 217052-223817 , PASA_asmbl_51715: 217049-227075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_230 0.0 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
2 Hb_003813_130 0.0695109031 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
3 Hb_011930_160 0.0708585384 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
4 Hb_001946_010 0.0769020066 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_000193_190 0.0879984715 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
6 Hb_000058_100 0.0893777484 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
7 Hb_003163_020 0.0894406348 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
8 Hb_001579_320 0.0911518712 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
9 Hb_006827_020 0.0927696974 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000853_350 0.0930042564 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
11 Hb_000523_050 0.0938169647 - - microsomal glutathione s-transferase, putative [Ricinus communis]
12 Hb_103012_010 0.0944149939 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
13 Hb_000260_170 0.0957739636 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
14 Hb_040262_010 0.0963343922 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
15 Hb_002783_240 0.0972710001 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
16 Hb_000023_220 0.0973786981 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
17 Hb_000011_200 0.0984548854 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
18 Hb_000025_470 0.0985166773 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
19 Hb_000123_210 0.1007992663 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
20 Hb_004689_050 0.101524801 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000627_230 Hb_000627_230 Hb_003813_130 Hb_003813_130 Hb_000627_230--Hb_003813_130 Hb_011930_160 Hb_011930_160 Hb_000627_230--Hb_011930_160 Hb_001946_010 Hb_001946_010 Hb_000627_230--Hb_001946_010 Hb_000193_190 Hb_000193_190 Hb_000627_230--Hb_000193_190 Hb_000058_100 Hb_000058_100 Hb_000627_230--Hb_000058_100 Hb_003163_020 Hb_003163_020 Hb_000627_230--Hb_003163_020 Hb_006827_020 Hb_006827_020 Hb_003813_130--Hb_006827_020 Hb_003813_130--Hb_011930_160 Hb_103012_010 Hb_103012_010 Hb_003813_130--Hb_103012_010 Hb_003813_130--Hb_001946_010 Hb_000523_050 Hb_000523_050 Hb_003813_130--Hb_000523_050 Hb_004055_030 Hb_004055_030 Hb_003813_130--Hb_004055_030 Hb_011930_160--Hb_003163_020 Hb_011930_160--Hb_001946_010 Hb_004619_030 Hb_004619_030 Hb_011930_160--Hb_004619_030 Hb_003025_110 Hb_003025_110 Hb_011930_160--Hb_003025_110 Hb_011930_160--Hb_000193_190 Hb_011930_160--Hb_103012_010 Hb_001946_010--Hb_103012_010 Hb_000260_170 Hb_000260_170 Hb_001946_010--Hb_000260_170 Hb_001946_010--Hb_000193_190 Hb_001946_010--Hb_003025_110 Hb_000205_100 Hb_000205_100 Hb_001946_010--Hb_000205_100 Hb_000193_190--Hb_000205_100 Hb_000011_200 Hb_000011_200 Hb_000193_190--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000193_190--Hb_000225_040 Hb_007576_110 Hb_007576_110 Hb_000193_190--Hb_007576_110 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_000058_100--Hb_003813_130 Hb_000076_120 Hb_000076_120 Hb_000058_100--Hb_000076_120 Hb_027472_150 Hb_027472_150 Hb_000058_100--Hb_027472_150 Hb_000058_100--Hb_004055_030 Hb_004310_130 Hb_004310_130 Hb_000058_100--Hb_004310_130 Hb_003163_020--Hb_004619_030 Hb_000347_070 Hb_000347_070 Hb_003163_020--Hb_000347_070 Hb_000617_180 Hb_000617_180 Hb_003163_020--Hb_000617_180 Hb_000317_470 Hb_000317_470 Hb_003163_020--Hb_000317_470 Hb_003163_020--Hb_000011_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9505 10.6025 12.4589 15.9002 32.4108 20.7898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1065 15.5171 15.7493 27.1892 10.6583

CAGE analysis