Hb_000627_250

Information

Type -
Description -
Location Contig627: 235486-239437
Sequence    

Annotation

kegg
ID rcu:RCOM_1677620
description hypothetical protein
nr
ID XP_012070519.1
description PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
swissprot
ID Q6M9M7
description Uncharacterized RNA methyltransferase pc1998 OS=Protochlamydia amoebophila (strain UWE25) GN=pc1998 PE=3 SV=1
trembl
ID A0A067LG67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10133 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51716: 231997-238713 , PASA_asmbl_51717: 238719-239016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_250 0.0 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
2 Hb_000948_170 0.0722004783 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
3 Hb_031284_070 0.0781640612 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
4 Hb_021346_030 0.0787202016 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
5 Hb_000015_100 0.080588083 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_001259_020 0.0891477315 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
7 Hb_025557_050 0.0933131316 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
8 Hb_000080_120 0.0960354482 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
9 Hb_000816_100 0.0975615521 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002027_090 0.0983373762 - - -
11 Hb_004218_280 0.1005110694 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
12 Hb_000346_060 0.1008436107 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
13 Hb_000740_050 0.1022880446 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
14 Hb_001789_190 0.1029608153 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
15 Hb_006816_180 0.1059023384 - - -
16 Hb_010812_050 0.1061933968 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
17 Hb_002639_140 0.1073435409 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
18 Hb_002780_020 0.1077716618 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
19 Hb_001492_030 0.1093237429 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
20 Hb_002217_260 0.1095050524 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]

Gene co-expression network

sample Hb_000627_250 Hb_000627_250 Hb_000948_170 Hb_000948_170 Hb_000627_250--Hb_000948_170 Hb_031284_070 Hb_031284_070 Hb_000627_250--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000627_250--Hb_021346_030 Hb_000015_100 Hb_000015_100 Hb_000627_250--Hb_000015_100 Hb_001259_020 Hb_001259_020 Hb_000627_250--Hb_001259_020 Hb_025557_050 Hb_025557_050 Hb_000627_250--Hb_025557_050 Hb_000948_170--Hb_000015_100 Hb_000948_170--Hb_031284_070 Hb_000948_170--Hb_021346_030 Hb_001205_300 Hb_001205_300 Hb_000948_170--Hb_001205_300 Hb_000816_100 Hb_000816_100 Hb_000948_170--Hb_000816_100 Hb_031284_070--Hb_021346_030 Hb_001660_120 Hb_001660_120 Hb_031284_070--Hb_001660_120 Hb_000740_050 Hb_000740_050 Hb_031284_070--Hb_000740_050 Hb_031284_070--Hb_001205_300 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_000080_120 Hb_000080_120 Hb_021346_030--Hb_000080_120 Hb_021346_030--Hb_000816_100 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_000015_100--Hb_031284_070 Hb_000015_100--Hb_000816_100 Hb_008206_060 Hb_008206_060 Hb_000015_100--Hb_008206_060 Hb_000661_030 Hb_000661_030 Hb_001259_020--Hb_000661_030 Hb_003203_030 Hb_003203_030 Hb_001259_020--Hb_003203_030 Hb_001259_020--Hb_000816_100 Hb_000331_560 Hb_000331_560 Hb_001259_020--Hb_000331_560 Hb_001498_010 Hb_001498_010 Hb_001259_020--Hb_001498_010 Hb_017151_010 Hb_017151_010 Hb_025557_050--Hb_017151_010 Hb_001789_190 Hb_001789_190 Hb_025557_050--Hb_001789_190 Hb_010812_050 Hb_010812_050 Hb_025557_050--Hb_010812_050 Hb_008059_010 Hb_008059_010 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96819 2.81041 4.10812 2.57798 3.65314 5.49101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42203 2.66544 2.54679 2.11938 8.50539

CAGE analysis