Hb_000627_260

Information

Type -
Description -
Location Contig627: 251663-264577
Sequence    

Annotation

kegg
ID rcu:RCOM_1677610
description chloride channel clc, putative
nr
ID XP_002509531.1
description chloride channel clc, putative [Ricinus communis]
swissprot
ID P92942
description Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1
trembl
ID B9RBJ7
description Chloride channel protein OS=Ricinus communis GN=RCOM_1677610 PE=3 SV=1
Gene Ontology
ID GO:0016021
description chloride channel protein clc-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51720: 252724-262271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_260 0.0 - - chloride channel clc, putative [Ricinus communis]
2 Hb_001769_170 0.1067028871 - - 50S ribosomal protein L31, putative [Ricinus communis]
3 Hb_009767_130 0.113775226 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
4 Hb_003994_160 0.1173199656 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
5 Hb_000796_160 0.1198305033 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
6 Hb_000172_440 0.1249391117 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
7 Hb_157023_020 0.1367970588 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001410_070 0.1376750333 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
9 Hb_000487_260 0.1381752481 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
10 Hb_000877_080 0.1412216582 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
11 Hb_000023_260 0.1412586816 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
12 Hb_001712_020 0.1419422077 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
13 Hb_000162_120 0.1421942176 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
14 Hb_004951_060 0.1425085589 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
15 Hb_008695_200 0.142889304 - - Protein grpE, putative [Ricinus communis]
16 Hb_029866_120 0.1431074633 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]
17 Hb_000239_040 0.1433788277 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
18 Hb_005731_160 0.1448381314 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_006538_120 0.1454659049 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
20 Hb_000282_080 0.1455149003 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000627_260 Hb_000627_260 Hb_001769_170 Hb_001769_170 Hb_000627_260--Hb_001769_170 Hb_009767_130 Hb_009767_130 Hb_000627_260--Hb_009767_130 Hb_003994_160 Hb_003994_160 Hb_000627_260--Hb_003994_160 Hb_000796_160 Hb_000796_160 Hb_000627_260--Hb_000796_160 Hb_000172_440 Hb_000172_440 Hb_000627_260--Hb_000172_440 Hb_157023_020 Hb_157023_020 Hb_000627_260--Hb_157023_020 Hb_001946_160 Hb_001946_160 Hb_001769_170--Hb_001946_160 Hb_001410_070 Hb_001410_070 Hb_001769_170--Hb_001410_070 Hb_021650_040 Hb_021650_040 Hb_001769_170--Hb_021650_040 Hb_000487_260 Hb_000487_260 Hb_001769_170--Hb_000487_260 Hb_006538_120 Hb_006538_120 Hb_001769_170--Hb_006538_120 Hb_000327_110 Hb_000327_110 Hb_009767_130--Hb_000327_110 Hb_001449_070 Hb_001449_070 Hb_009767_130--Hb_001449_070 Hb_000189_450 Hb_000189_450 Hb_009767_130--Hb_000189_450 Hb_009767_130--Hb_003994_160 Hb_000941_100 Hb_000941_100 Hb_009767_130--Hb_000941_100 Hb_007054_070 Hb_007054_070 Hb_009767_130--Hb_007054_070 Hb_008695_200 Hb_008695_200 Hb_003994_160--Hb_008695_200 Hb_000086_080 Hb_000086_080 Hb_003994_160--Hb_000086_080 Hb_073973_090 Hb_073973_090 Hb_003994_160--Hb_073973_090 Hb_003053_110 Hb_003053_110 Hb_003994_160--Hb_003053_110 Hb_007192_030 Hb_007192_030 Hb_003994_160--Hb_007192_030 Hb_003994_160--Hb_000941_100 Hb_000025_780 Hb_000025_780 Hb_000796_160--Hb_000025_780 Hb_001935_100 Hb_001935_100 Hb_000796_160--Hb_001935_100 Hb_000796_160--Hb_001410_070 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_007477_050 Hb_007477_050 Hb_000172_440--Hb_007477_050 Hb_015934_120 Hb_015934_120 Hb_000172_440--Hb_015934_120 Hb_006683_070 Hb_006683_070 Hb_000172_440--Hb_006683_070 Hb_000172_440--Hb_000327_110 Hb_005800_030 Hb_005800_030 Hb_000172_440--Hb_005800_030 Hb_009661_030 Hb_009661_030 Hb_000172_440--Hb_009661_030 Hb_000840_200 Hb_000840_200 Hb_157023_020--Hb_000840_200 Hb_002572_020 Hb_002572_020 Hb_157023_020--Hb_002572_020 Hb_157023_020--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_157023_020--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_157023_020--Hb_000023_260 Hb_000603_160 Hb_000603_160 Hb_157023_020--Hb_000603_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164539 0.195724 0.28789 0.343566 0.125551 0.248091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.36269 0.448482 0.103678 0.0755434 0.606931

CAGE analysis