Hb_000627_300

Information

Type -
Description -
Location Contig627: 290534-292974
Sequence    

Annotation

kegg
ID rcu:RCOM_1677380
description structural constituent of ribosome, putative
nr
ID XP_012070510.1
description PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
swissprot
ID P82024
description 30S ribosomal protein S21, chloroplastic (Fragment) OS=Spinacia oleracea GN=rps21 PE=1 SV=1
trembl
ID A0A067LN88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10130 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s21 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51722: 290390-292298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_300 0.0 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
2 Hb_001124_180 0.1009921523 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
3 Hb_000176_010 0.1087219877 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
4 Hb_005489_090 0.112067906 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
5 Hb_002374_300 0.1122523545 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
6 Hb_002150_130 0.1151772753 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
7 Hb_005846_030 0.1233270265 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
8 Hb_000042_290 0.1267078345 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
9 Hb_005725_220 0.1279535758 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
10 Hb_001124_190 0.1319286114 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001755_030 0.1353020255 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
12 Hb_114861_010 0.1361739894 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
13 Hb_000110_230 0.1383944692 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
14 Hb_000164_140 0.1442137796 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_007426_170 0.1450594454 transcription factor TF Family: TCP -
16 Hb_088500_010 0.1466256614 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
17 Hb_009780_050 0.1471918581 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
18 Hb_000638_160 0.1473270532 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
19 Hb_001790_030 0.1474207363 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
20 Hb_027472_100 0.1488795145 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]

Gene co-expression network

sample Hb_000627_300 Hb_000627_300 Hb_001124_180 Hb_001124_180 Hb_000627_300--Hb_001124_180 Hb_000176_010 Hb_000176_010 Hb_000627_300--Hb_000176_010 Hb_005489_090 Hb_005489_090 Hb_000627_300--Hb_005489_090 Hb_002374_300 Hb_002374_300 Hb_000627_300--Hb_002374_300 Hb_002150_130 Hb_002150_130 Hb_000627_300--Hb_002150_130 Hb_005846_030 Hb_005846_030 Hb_000627_300--Hb_005846_030 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_001124_180--Hb_000176_010 Hb_009780_050 Hb_009780_050 Hb_000176_010--Hb_009780_050 Hb_000176_010--Hb_000042_290 Hb_000176_010--Hb_002150_130 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050 Hb_005489_090--Hb_003935_080 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_002374_300--Hb_001124_180 Hb_002374_300--Hb_000176_010 Hb_002374_300--Hb_005489_090 Hb_004128_070 Hb_004128_070 Hb_002374_300--Hb_004128_070 Hb_002374_300--Hb_009780_050 Hb_002150_130--Hb_000042_290 Hb_005914_050 Hb_005914_050 Hb_002150_130--Hb_005914_050 Hb_009178_070 Hb_009178_070 Hb_002150_130--Hb_009178_070 Hb_004117_040 Hb_004117_040 Hb_002150_130--Hb_004117_040 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_005846_030--Hb_000167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86966 2.81585 41.2936 16.9576 5.23979 5.2205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9065 34.8296 10.6909 7.11503 64.2122

CAGE analysis