Hb_000628_060

Information

Type -
Description -
Location Contig628: 96380-97718
Sequence    

Annotation

kegg
ID sly:101261515
description calmodulin-like protein 5
nr
ID XP_010320533.1
description PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID A0A067L2N0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04284 PE=4 SV=1
Gene Ontology
ID GO:0005622
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000628_060 0.0 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
2 Hb_003777_150 0.0907125715 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
3 Hb_000579_210 0.1020519984 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
4 Hb_004474_020 0.1142909149 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_081228_010 0.1192093389 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
6 Hb_084304_010 0.1209845284 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
7 Hb_004970_100 0.1218221952 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
8 Hb_000186_090 0.1240906349 - - ACC oxidase 1 [Hevea brasiliensis]
9 Hb_045786_010 0.1252798754 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_000270_790 0.1256993287 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
11 Hb_001248_180 0.1285788652 - - -
12 Hb_000188_140 0.1287225271 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
13 Hb_069384_010 0.1370440755 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
14 Hb_003427_070 0.1392211694 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
15 Hb_002925_040 0.1396583473 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
16 Hb_029508_040 0.1404629273 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
17 Hb_004453_060 0.1413543236 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
18 Hb_002277_020 0.1414376908 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
19 Hb_000224_020 0.1418154757 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
20 Hb_008406_050 0.1444283726 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000628_060 Hb_000628_060 Hb_003777_150 Hb_003777_150 Hb_000628_060--Hb_003777_150 Hb_000579_210 Hb_000579_210 Hb_000628_060--Hb_000579_210 Hb_004474_020 Hb_004474_020 Hb_000628_060--Hb_004474_020 Hb_081228_010 Hb_081228_010 Hb_000628_060--Hb_081228_010 Hb_084304_010 Hb_084304_010 Hb_000628_060--Hb_084304_010 Hb_004970_100 Hb_004970_100 Hb_000628_060--Hb_004970_100 Hb_003777_150--Hb_084304_010 Hb_003427_070 Hb_003427_070 Hb_003777_150--Hb_003427_070 Hb_003777_150--Hb_004474_020 Hb_003777_150--Hb_004970_100 Hb_069384_010 Hb_069384_010 Hb_003777_150--Hb_069384_010 Hb_045786_010 Hb_045786_010 Hb_000579_210--Hb_045786_010 Hb_000188_140 Hb_000188_140 Hb_000579_210--Hb_000188_140 Hb_000186_090 Hb_000186_090 Hb_000579_210--Hb_000186_090 Hb_074100_010 Hb_074100_010 Hb_000579_210--Hb_074100_010 Hb_029508_040 Hb_029508_040 Hb_000579_210--Hb_029508_040 Hb_004899_380 Hb_004899_380 Hb_004474_020--Hb_004899_380 Hb_000224_020 Hb_000224_020 Hb_004474_020--Hb_000224_020 Hb_034310_020 Hb_034310_020 Hb_004474_020--Hb_034310_020 Hb_048987_020 Hb_048987_020 Hb_004474_020--Hb_048987_020 Hb_008406_050 Hb_008406_050 Hb_004474_020--Hb_008406_050 Hb_001248_180 Hb_001248_180 Hb_081228_010--Hb_001248_180 Hb_081228_010--Hb_004899_380 Hb_081228_010--Hb_004474_020 Hb_081228_010--Hb_048987_020 Hb_001006_130 Hb_001006_130 Hb_081228_010--Hb_001006_130 Hb_084304_010--Hb_003427_070 Hb_006351_050 Hb_006351_050 Hb_084304_010--Hb_006351_050 Hb_084304_010--Hb_000188_140 Hb_001500_020 Hb_001500_020 Hb_084304_010--Hb_001500_020 Hb_000739_190 Hb_000739_190 Hb_084304_010--Hb_000739_190 Hb_006026_020 Hb_006026_020 Hb_004970_100--Hb_006026_020 Hb_005214_050 Hb_005214_050 Hb_004970_100--Hb_005214_050 Hb_000373_260 Hb_000373_260 Hb_004970_100--Hb_000373_260 Hb_001417_090 Hb_001417_090 Hb_004970_100--Hb_001417_090 Hb_004031_050 Hb_004031_050 Hb_004970_100--Hb_004031_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.217062 3.57428 4.2923 23.2877 0.0423945 0.442688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.473932 0.476518

CAGE analysis