Hb_000629_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig629: 5964-13689
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11630g
description POPTRDRAFT_578746; WRKY family transcription factor family protein
nr
ID XP_012071501.1
description PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
swissprot
ID P59583
description Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1
trembl
ID M9TNQ2
description Uncharacterized protein OS=Jatropha curcas GN=WRKY02 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 32 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51774: 6195-13835 , PASA_asmbl_51775: 7984-8261 , PASA_asmbl_51776: 10896-11202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000629_010 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
2 Hb_000808_270 0.0568372053 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
3 Hb_000030_300 0.0603268258 - - Thioredoxin, putative [Ricinus communis]
4 Hb_002603_120 0.0634528382 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
5 Hb_004355_020 0.0646473408 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
6 Hb_011218_040 0.0649061313 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
7 Hb_039946_020 0.065183514 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004837_040 0.0667665425 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
9 Hb_001677_210 0.0680252089 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
10 Hb_001489_150 0.0712758029 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
11 Hb_002026_180 0.0728701318 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
12 Hb_123352_020 0.0743661401 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
13 Hb_000011_200 0.0757856955 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
14 Hb_000487_290 0.0772092922 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
15 Hb_007416_280 0.0774510987 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000123_210 0.0776411865 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
17 Hb_002499_040 0.0776742897 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
18 Hb_007813_040 0.0776885848 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
19 Hb_003058_190 0.0782898632 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
20 Hb_006827_020 0.0797090953 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000629_010 Hb_000629_010 Hb_000808_270 Hb_000808_270 Hb_000629_010--Hb_000808_270 Hb_000030_300 Hb_000030_300 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_004355_020 Hb_004355_020 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_003175_010 Hb_003175_010 Hb_000808_270--Hb_003175_010 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_000030_300--Hb_003175_010 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280 Hb_000853_420 Hb_000853_420 Hb_002603_120--Hb_000853_420 Hb_001595_030 Hb_001595_030 Hb_002603_120--Hb_001595_030 Hb_002603_120--Hb_000030_300 Hb_005188_050 Hb_005188_050 Hb_002603_120--Hb_005188_050 Hb_004491_010 Hb_004491_010 Hb_002603_120--Hb_004491_010 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_001021_170 Hb_001021_170 Hb_004355_020--Hb_001021_170 Hb_004355_020--Hb_011218_040 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020 Hb_000260_270 Hb_000260_270 Hb_011218_040--Hb_000260_270 Hb_005064_060 Hb_005064_060 Hb_011218_040--Hb_005064_060 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_012022_030 Hb_012022_030 Hb_039946_020--Hb_012022_030 Hb_004223_090 Hb_004223_090 Hb_039946_020--Hb_004223_090 Hb_000062_240 Hb_000062_240 Hb_039946_020--Hb_000062_240 Hb_003615_010 Hb_003615_010 Hb_039946_020--Hb_003615_010 Hb_039946_020--Hb_002026_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9297 21.8907 14.4873 12.7175 22.3194 31.2049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1066 22.5733 27.8435 24.0792 8.59072

CAGE analysis