Hb_000629_120

Information

Type -
Description -
Location Contig629: 143278-144102
Sequence    

Annotation

kegg
ID tcc:TCM_037083
description Polynucleotidyl transferase, ribonuclease H-like superfamily protein
nr
ID XP_007011965.1
description Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
swissprot
ID Q9SKZ2
description Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2
trembl
ID A0A061GR30
description Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobroma cacao GN=TCM_037083 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51779: 143054-143590 , PASA_asmbl_51780: 143607-144110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000629_120 0.0 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
2 Hb_000161_060 0.0720484026 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
3 Hb_000138_110 0.0864845494 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
4 Hb_000125_100 0.0883458196 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
5 Hb_092337_010 0.0908941609 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
6 Hb_000567_120 0.0929349199 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
7 Hb_001205_150 0.0988314973 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
8 Hb_009646_040 0.0989617337 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_017110_010 0.1051079566 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
10 Hb_000258_270 0.1061921245 - - PREDICTED: cullin-3A [Jatropha curcas]
11 Hb_003671_020 0.1075161492 - - calcineurin B, putative [Ricinus communis]
12 Hb_010174_020 0.1081579037 - - protein binding protein, putative [Ricinus communis]
13 Hb_000692_220 0.1082200992 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
14 Hb_004738_040 0.1086443149 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
15 Hb_004079_030 0.1113781334 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
16 Hb_000749_220 0.114445968 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
17 Hb_002005_020 0.1147084888 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000510_320 0.1149822955 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
19 Hb_001936_010 0.1153460247 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
20 Hb_004738_100 0.1159547042 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_000629_120 Hb_000629_120 Hb_000161_060 Hb_000161_060 Hb_000629_120--Hb_000161_060 Hb_000138_110 Hb_000138_110 Hb_000629_120--Hb_000138_110 Hb_000125_100 Hb_000125_100 Hb_000629_120--Hb_000125_100 Hb_092337_010 Hb_092337_010 Hb_000629_120--Hb_092337_010 Hb_000567_120 Hb_000567_120 Hb_000629_120--Hb_000567_120 Hb_001205_150 Hb_001205_150 Hb_000629_120--Hb_001205_150 Hb_000161_060--Hb_001205_150 Hb_010174_020 Hb_010174_020 Hb_000161_060--Hb_010174_020 Hb_000692_220 Hb_000692_220 Hb_000161_060--Hb_000692_220 Hb_000985_060 Hb_000985_060 Hb_000161_060--Hb_000985_060 Hb_000161_060--Hb_092337_010 Hb_000092_010 Hb_000092_010 Hb_000138_110--Hb_000092_010 Hb_004079_030 Hb_004079_030 Hb_000138_110--Hb_004079_030 Hb_000258_270 Hb_000258_270 Hb_000138_110--Hb_000258_270 Hb_000096_010 Hb_000096_010 Hb_000138_110--Hb_000096_010 Hb_002027_040 Hb_002027_040 Hb_000138_110--Hb_002027_040 Hb_003671_020 Hb_003671_020 Hb_000125_100--Hb_003671_020 Hb_000125_100--Hb_092337_010 Hb_003414_050 Hb_003414_050 Hb_000125_100--Hb_003414_050 Hb_000125_100--Hb_001205_150 Hb_009615_070 Hb_009615_070 Hb_000125_100--Hb_009615_070 Hb_004738_100 Hb_004738_100 Hb_092337_010--Hb_004738_100 Hb_092337_010--Hb_000692_220 Hb_001936_010 Hb_001936_010 Hb_092337_010--Hb_001936_010 Hb_003108_020 Hb_003108_020 Hb_092337_010--Hb_003108_020 Hb_004705_100 Hb_004705_100 Hb_092337_010--Hb_004705_100 Hb_008695_100 Hb_008695_100 Hb_000567_120--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_001205_150--Hb_000692_220 Hb_001205_150--Hb_010174_020 Hb_000479_190 Hb_000479_190 Hb_001205_150--Hb_000479_190 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_003502_090 Hb_003502_090 Hb_001205_150--Hb_003502_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40983 5.86555 2.93795 14.1488 6.98918 11.7206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.00712 13.7575 23.7531 5.66574 5.23213

CAGE analysis