Hb_000630_050

Information

Type -
Description -
Location Contig630: 80578-81837
Sequence    

Annotation

kegg
ID rcu:RCOM_0516920
description hypothetical protein
nr
ID XP_002528739.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZW88
description F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1
trembl
ID B9SRX0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0516920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000630_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000808_280 0.0591839973 - - conserved hypothetical protein [Ricinus communis]
3 Hb_106724_020 0.0596758127 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
4 Hb_000085_160 0.0602879972 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
5 Hb_006827_020 0.0610738054 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007317_110 0.0640260691 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
7 Hb_000011_200 0.0694251933 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
8 Hb_000020_190 0.0713997022 - - hypothetical protein RCOM_0452240 [Ricinus communis]
9 Hb_001454_130 0.0715862376 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
10 Hb_011671_430 0.0717903489 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
11 Hb_005993_020 0.0719335732 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
12 Hb_004055_030 0.0724146993 - - casein kinase, putative [Ricinus communis]
13 Hb_003665_060 0.0755172299 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
14 Hb_001680_010 0.0756712575 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
15 Hb_001369_180 0.075793091 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
16 Hb_005357_080 0.078067141 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
17 Hb_000808_270 0.0781419121 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
18 Hb_002078_020 0.0784659853 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
19 Hb_014497_050 0.0786158131 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
20 Hb_001638_170 0.0786427519 - - hypothetical protein Csa_3G118170 [Cucumis sativus]

Gene co-expression network

sample Hb_000630_050 Hb_000630_050 Hb_000808_280 Hb_000808_280 Hb_000630_050--Hb_000808_280 Hb_106724_020 Hb_106724_020 Hb_000630_050--Hb_106724_020 Hb_000085_160 Hb_000085_160 Hb_000630_050--Hb_000085_160 Hb_006827_020 Hb_006827_020 Hb_000630_050--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000630_050--Hb_007317_110 Hb_000011_200 Hb_000011_200 Hb_000630_050--Hb_000011_200 Hb_000808_280--Hb_000085_160 Hb_003693_070 Hb_003693_070 Hb_000808_280--Hb_003693_070 Hb_000083_250 Hb_000083_250 Hb_000808_280--Hb_000083_250 Hb_000120_060 Hb_000120_060 Hb_000808_280--Hb_000120_060 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_003813_130 Hb_003813_130 Hb_106724_020--Hb_003813_130 Hb_004055_030 Hb_004055_030 Hb_106724_020--Hb_004055_030 Hb_001102_140 Hb_001102_140 Hb_106724_020--Hb_001102_140 Hb_106724_020--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_106724_020--Hb_001454_130 Hb_000085_160--Hb_007317_110 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000085_160--Hb_000011_200 Hb_003665_060 Hb_003665_060 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_006827_020--Hb_007317_110 Hb_000808_270 Hb_000808_270 Hb_006827_020--Hb_000808_270 Hb_007059_010 Hb_007059_010 Hb_006827_020--Hb_007059_010 Hb_000538_100 Hb_000538_100 Hb_006827_020--Hb_000538_100 Hb_006827_020--Hb_000011_200 Hb_006827_020--Hb_003813_130 Hb_007317_110--Hb_003665_060 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007317_110--Hb_007059_010 Hb_000225_040 Hb_000225_040 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_000011_200--Hb_007317_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.906 8.93776 6.61979 11.3634 13.1679 16.8524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.47 10.4793 11.68 10.353 6.24851

CAGE analysis