Hb_000630_060

Information

Type -
Description -
Location Contig630: 84457-88052
Sequence    

Annotation

kegg
ID rcu:RCOM_0516930
description iron-sulfur cluster assembly protein, putative
nr
ID XP_012066492.1
description PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
swissprot
ID Q8LBM4
description Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2
trembl
ID A0A067LE30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23680 PE=4 SV=1
Gene Ontology
ID GO:0005198
description iron-sulfur assembly mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51809: 86030-87902 , PASA_asmbl_51810: 86371-86785 , PASA_asmbl_51812: 87454-87591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000630_060 0.0 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
2 Hb_033594_110 0.0566248129 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
3 Hb_003927_140 0.076223208 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
4 Hb_007317_150 0.0770512979 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
5 Hb_000926_300 0.0774035906 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
6 Hb_002518_050 0.0774099486 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
7 Hb_002110_120 0.0828951668 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
8 Hb_128048_010 0.0839191632 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
9 Hb_003683_110 0.0854721932 - - JHL10I11.3 [Jatropha curcas]
10 Hb_001235_190 0.0855853847 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
11 Hb_165132_010 0.0859806641 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
12 Hb_181288_010 0.0866946063 - - rac-GTP binding protein, putative [Ricinus communis]
13 Hb_012573_070 0.0869910522 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000510_110 0.087536325 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
15 Hb_134949_020 0.0878384089 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
16 Hb_145880_030 0.0884937627 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
17 Hb_001817_090 0.0894842129 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
18 Hb_001016_030 0.0904548197 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
19 Hb_000007_100 0.0925458981 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
20 Hb_000000_170 0.0928228977 - - defender against cell death, putative [Ricinus communis]

Gene co-expression network

sample Hb_000630_060 Hb_000630_060 Hb_033594_110 Hb_033594_110 Hb_000630_060--Hb_033594_110 Hb_003927_140 Hb_003927_140 Hb_000630_060--Hb_003927_140 Hb_007317_150 Hb_007317_150 Hb_000630_060--Hb_007317_150 Hb_000926_300 Hb_000926_300 Hb_000630_060--Hb_000926_300 Hb_002518_050 Hb_002518_050 Hb_000630_060--Hb_002518_050 Hb_002110_120 Hb_002110_120 Hb_000630_060--Hb_002110_120 Hb_003126_090 Hb_003126_090 Hb_033594_110--Hb_003126_090 Hb_165132_010 Hb_165132_010 Hb_033594_110--Hb_165132_010 Hb_134949_020 Hb_134949_020 Hb_033594_110--Hb_134949_020 Hb_145880_030 Hb_145880_030 Hb_033594_110--Hb_145880_030 Hb_001016_030 Hb_001016_030 Hb_033594_110--Hb_001016_030 Hb_003528_060 Hb_003528_060 Hb_003927_140--Hb_003528_060 Hb_001818_020 Hb_001818_020 Hb_003927_140--Hb_001818_020 Hb_002716_090 Hb_002716_090 Hb_003927_140--Hb_002716_090 Hb_012573_070 Hb_012573_070 Hb_003927_140--Hb_012573_070 Hb_001538_120 Hb_001538_120 Hb_003927_140--Hb_001538_120 Hb_007317_150--Hb_002110_120 Hb_001235_190 Hb_001235_190 Hb_007317_150--Hb_001235_190 Hb_001269_630 Hb_001269_630 Hb_007317_150--Hb_001269_630 Hb_000020_060 Hb_000020_060 Hb_007317_150--Hb_000020_060 Hb_007317_150--Hb_000926_300 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_000510_110 Hb_000510_110 Hb_002518_050--Hb_000510_110 Hb_002518_050--Hb_012573_070 Hb_003018_120 Hb_003018_120 Hb_002518_050--Hb_003018_120 Hb_002518_050--Hb_165132_010 Hb_000970_010 Hb_000970_010 Hb_002518_050--Hb_000970_010 Hb_002518_050--Hb_001818_020 Hb_002110_120--Hb_001269_630 Hb_002110_120--Hb_000020_060 Hb_002110_120--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_002110_120--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_002110_120--Hb_008173_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.2819 16.4032 23.3856 26.4518 41.3854 30.9017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.7 83.5225 28.5026 14.7777 11.3907

CAGE analysis