Hb_000631_070

Information

Type transcription factor
Description TF Family: C2H2
Location Contig631: 70685-87906
Sequence    

Annotation

kegg
ID rcu:RCOM_1469870
description histone deacetylase hda1, putative
nr
ID XP_012080374.1
description PREDICTED: histone deacetylase 5 [Jatropha curcas]
swissprot
ID Q8RX28
description Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=1 SV=1
trembl
ID A0A067K5E5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11718 PE=4 SV=1
Gene Ontology
ID GO:0016787
description histone deacetylase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000631_070 0.0 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
2 Hb_042202_030 0.1277906379 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
3 Hb_004411_060 0.1397467179 - - acetolactate synthase, putative [Ricinus communis]
4 Hb_002338_050 0.1435826958 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
5 Hb_002304_070 0.1458662956 - - -
6 Hb_019053_030 0.1505627926 - - PREDICTED: sulfite oxidase [Jatropha curcas]
7 Hb_002814_070 0.1543431256 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
8 Hb_000510_240 0.1544784762 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
9 Hb_000286_200 0.1606377909 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
10 Hb_007023_030 0.1619153785 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
11 Hb_005147_030 0.1628292834 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
12 Hb_098315_080 0.163011825 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
13 Hb_003747_020 0.1654119944 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
14 Hb_002005_100 0.1661746155 - - -
15 Hb_001168_050 0.1668016689 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
16 Hb_002131_030 0.1677006801 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
17 Hb_003057_010 0.1680270323 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
18 Hb_014894_010 0.1699235438 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
19 Hb_000227_070 0.1702287895 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
20 Hb_007747_210 0.170239709 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000631_070 Hb_000631_070 Hb_042202_030 Hb_042202_030 Hb_000631_070--Hb_042202_030 Hb_004411_060 Hb_004411_060 Hb_000631_070--Hb_004411_060 Hb_002338_050 Hb_002338_050 Hb_000631_070--Hb_002338_050 Hb_002304_070 Hb_002304_070 Hb_000631_070--Hb_002304_070 Hb_019053_030 Hb_019053_030 Hb_000631_070--Hb_019053_030 Hb_002814_070 Hb_002814_070 Hb_000631_070--Hb_002814_070 Hb_007747_210 Hb_007747_210 Hb_042202_030--Hb_007747_210 Hb_000020_120 Hb_000020_120 Hb_042202_030--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_042202_030--Hb_003688_150 Hb_002799_070 Hb_002799_070 Hb_042202_030--Hb_002799_070 Hb_079312_010 Hb_079312_010 Hb_042202_030--Hb_079312_010 Hb_000116_430 Hb_000116_430 Hb_042202_030--Hb_000116_430 Hb_098315_080 Hb_098315_080 Hb_004411_060--Hb_098315_080 Hb_164898_010 Hb_164898_010 Hb_004411_060--Hb_164898_010 Hb_006909_010 Hb_006909_010 Hb_004411_060--Hb_006909_010 Hb_002005_100 Hb_002005_100 Hb_004411_060--Hb_002005_100 Hb_025193_040 Hb_025193_040 Hb_004411_060--Hb_025193_040 Hb_003747_020 Hb_003747_020 Hb_004411_060--Hb_003747_020 Hb_004480_100 Hb_004480_100 Hb_002338_050--Hb_004480_100 Hb_007023_030 Hb_007023_030 Hb_002338_050--Hb_007023_030 Hb_003467_030 Hb_003467_030 Hb_002338_050--Hb_003467_030 Hb_001242_130 Hb_001242_130 Hb_002338_050--Hb_001242_130 Hb_002768_060 Hb_002768_060 Hb_002338_050--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_002338_050--Hb_000789_200 Hb_002304_070--Hb_003467_030 Hb_001010_070 Hb_001010_070 Hb_002304_070--Hb_001010_070 Hb_011386_020 Hb_011386_020 Hb_002304_070--Hb_011386_020 Hb_002304_070--Hb_002338_050 Hb_001595_080 Hb_001595_080 Hb_002304_070--Hb_001595_080 Hb_002304_070--Hb_007023_030 Hb_000228_110 Hb_000228_110 Hb_019053_030--Hb_000228_110 Hb_005147_030 Hb_005147_030 Hb_019053_030--Hb_005147_030 Hb_000031_120 Hb_000031_120 Hb_019053_030--Hb_000031_120 Hb_002889_030 Hb_002889_030 Hb_019053_030--Hb_002889_030 Hb_019053_030--Hb_003747_020 Hb_000181_050 Hb_000181_050 Hb_019053_030--Hb_000181_050 Hb_002631_030 Hb_002631_030 Hb_002814_070--Hb_002631_030 Hb_000329_760 Hb_000329_760 Hb_002814_070--Hb_000329_760 Hb_031340_050 Hb_031340_050 Hb_002814_070--Hb_031340_050 Hb_002197_050 Hb_002197_050 Hb_002814_070--Hb_002197_050 Hb_009687_010 Hb_009687_010 Hb_002814_070--Hb_009687_010 Hb_000137_090 Hb_000137_090 Hb_002814_070--Hb_000137_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.883069 0.812968 0.970339 1.224 2.08364 1.80108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33277 2.16962 2.89408 6.61161 4.32059

CAGE analysis