Hb_000631_120

Information

Type -
Description -
Location Contig631: 157643-168628
Sequence    

Annotation

kegg
ID mtr:MTR_3g025280
description Activating signal cointegrator 1 complex subunit
nr
ID KDO54636.1
description hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
swissprot
ID Q9ZVW2
description Protein HUA ENHANCER 2 OS=Arabidopsis thaliana GN=HEN2 PE=1 SV=2
trembl
ID A0A067EUQ0
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0431902mg PE=4 SV=1
Gene Ontology
ID GO:0019013
description activating signal cointegrator 1 complex subunit 3 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51836: 143655-169062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000631_120 0.0 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
2 Hb_000940_200 0.0616600247 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
3 Hb_000862_040 0.076486781 - - ara4-interacting protein, putative [Ricinus communis]
4 Hb_007054_040 0.0828649864 - - PREDICTED: protein RST1 [Jatropha curcas]
5 Hb_001935_140 0.0833839053 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
6 Hb_000363_120 0.0860642989 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
7 Hb_001862_110 0.0867365673 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
8 Hb_000059_020 0.0880394275 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
9 Hb_062416_010 0.0898814006 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
10 Hb_001031_090 0.0918687904 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
11 Hb_000120_820 0.092195855 - - dihydrodipicolinate synthase, putative [Ricinus communis]
12 Hb_008948_140 0.0951351453 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
13 Hb_000009_330 0.095199797 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
14 Hb_010381_030 0.0956316574 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
15 Hb_000105_040 0.0973366494 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
16 Hb_004143_100 0.0980376436 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000213_120 0.0988034772 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_005542_140 0.0993905359 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
19 Hb_001541_250 0.0994393923 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
20 Hb_000703_200 0.0995413924 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000631_120 Hb_000631_120 Hb_000940_200 Hb_000940_200 Hb_000631_120--Hb_000940_200 Hb_000862_040 Hb_000862_040 Hb_000631_120--Hb_000862_040 Hb_007054_040 Hb_007054_040 Hb_000631_120--Hb_007054_040 Hb_001935_140 Hb_001935_140 Hb_000631_120--Hb_001935_140 Hb_000363_120 Hb_000363_120 Hb_000631_120--Hb_000363_120 Hb_001862_110 Hb_001862_110 Hb_000631_120--Hb_001862_110 Hb_000940_200--Hb_000862_040 Hb_001205_200 Hb_001205_200 Hb_000940_200--Hb_001205_200 Hb_000940_200--Hb_000363_120 Hb_000059_020 Hb_000059_020 Hb_000940_200--Hb_000059_020 Hb_003866_080 Hb_003866_080 Hb_000940_200--Hb_003866_080 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_000862_040--Hb_000059_020 Hb_000862_040--Hb_001935_140 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_001541_250 Hb_001541_250 Hb_007054_040--Hb_001541_250 Hb_007054_040--Hb_001862_110 Hb_000373_100 Hb_000373_100 Hb_007054_040--Hb_000373_100 Hb_007054_040--Hb_001935_140 Hb_005389_160 Hb_005389_160 Hb_007054_040--Hb_005389_160 Hb_000169_170 Hb_000169_170 Hb_007054_040--Hb_000169_170 Hb_000105_040 Hb_000105_040 Hb_001935_140--Hb_000105_040 Hb_001935_140--Hb_001541_250 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_001935_140--Hb_005542_140 Hb_000094_090 Hb_000094_090 Hb_000363_120--Hb_000094_090 Hb_000809_160 Hb_000809_160 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_004899_040 Hb_004899_040 Hb_000363_120--Hb_004899_040 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150 Hb_001862_110--Hb_001541_250 Hb_009486_160 Hb_009486_160 Hb_001862_110--Hb_009486_160 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_000926_150 Hb_000926_150 Hb_001862_110--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001862_110--Hb_002812_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.166 39.1206 15.3742 18.7707 12.9682 15.762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.20977 17.3872 9.22571 27.9395 13.1872

CAGE analysis