Hb_000631_150

Information

Type -
Description -
Location Contig631: 184603-191191
Sequence    

Annotation

kegg
ID pop:POPTR_0012s06710g
description POPTRDRAFT_569930; hypothetical protein
nr
ID XP_012080362.1
description PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
swissprot
ID Q9FNQ0
description Protein LEO1 homolog OS=Arabidopsis thaliana GN=VIP4 PE=1 SV=1
trembl
ID A0A067K5D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11708 PE=4 SV=1
Gene Ontology
ID GO:0005829
description rna polymerase-associated protein leo1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51839: 184619-190161 , PASA_asmbl_51840: 190467-190773 , PASA_asmbl_51841: 191084-191179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000631_150 0.0 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
2 Hb_000317_440 0.0523728703 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
3 Hb_000134_360 0.0592879381 - - PREDICTED: protein gar2 [Jatropha curcas]
4 Hb_000849_100 0.0602862145 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
5 Hb_004608_020 0.0657544887 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
6 Hb_000318_140 0.0662451743 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
7 Hb_031754_010 0.0707179627 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
8 Hb_000335_010 0.070799208 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_025557_020 0.0715786555 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
10 Hb_153547_010 0.0724377275 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
11 Hb_000116_170 0.0729095925 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
12 Hb_002725_070 0.0748353078 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
13 Hb_000684_180 0.075748341 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
14 Hb_000457_060 0.0759966696 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
15 Hb_000078_100 0.0793151911 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
16 Hb_117950_020 0.0794365749 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
17 Hb_002883_010 0.0795878454 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
18 Hb_000003_790 0.0799908621 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
19 Hb_004881_050 0.0801710919 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
20 Hb_001226_180 0.0822418037 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000631_150 Hb_000631_150 Hb_000317_440 Hb_000317_440 Hb_000631_150--Hb_000317_440 Hb_000134_360 Hb_000134_360 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_000318_140 Hb_000318_140 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_001437_100 Hb_001437_100 Hb_000317_440--Hb_001437_100 Hb_000136_150 Hb_000136_150 Hb_000317_440--Hb_000136_150 Hb_002883_010 Hb_002883_010 Hb_000317_440--Hb_002883_010 Hb_016657_020 Hb_016657_020 Hb_000317_440--Hb_016657_020 Hb_153547_010 Hb_153547_010 Hb_000317_440--Hb_153547_010 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_008528_010 Hb_008528_010 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_000134_360--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_000849_100--Hb_006002_030 Hb_003716_020 Hb_003716_020 Hb_000849_100--Hb_003716_020 Hb_002725_070 Hb_002725_070 Hb_000849_100--Hb_002725_070 Hb_002235_320 Hb_002235_320 Hb_000849_100--Hb_002235_320 Hb_009118_010 Hb_009118_010 Hb_004608_020--Hb_009118_010 Hb_000116_170 Hb_000116_170 Hb_004608_020--Hb_000116_170 Hb_000457_060 Hb_000457_060 Hb_004608_020--Hb_000457_060 Hb_000017_340 Hb_000017_340 Hb_004608_020--Hb_000017_340 Hb_000078_100 Hb_000078_100 Hb_004608_020--Hb_000078_100 Hb_025557_020 Hb_025557_020 Hb_000318_140--Hb_025557_020 Hb_002820_040 Hb_002820_040 Hb_000318_140--Hb_002820_040 Hb_018663_020 Hb_018663_020 Hb_000318_140--Hb_018663_020 Hb_000035_400 Hb_000035_400 Hb_000318_140--Hb_000035_400 Hb_009615_110 Hb_009615_110 Hb_000318_140--Hb_009615_110 Hb_000335_010 Hb_000335_010 Hb_031754_010--Hb_000335_010 Hb_001975_020 Hb_001975_020 Hb_031754_010--Hb_001975_020 Hb_000035_040 Hb_000035_040 Hb_031754_010--Hb_000035_040 Hb_031754_010--Hb_002883_010 Hb_046615_020 Hb_046615_020 Hb_031754_010--Hb_046615_020 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.024 39.5145 15.6759 23.6648 141.818 142.43
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.3261 26.3607 42.9499 46.369 22.8789

CAGE analysis