Hb_000633_020

Information

Type -
Description -
Location Contig633: 37194-50172
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04150g
description POPTRDRAFT_177820; hypothetical protein
nr
ID XP_012067061.1
description PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
swissprot
ID Q2G6X5
description Elongation factor P OS=Novosphingobium aromaticivorans (strain DSM 12444 / F199) GN=efp PE=3 SV=1
trembl
ID B9GLE0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04150g PE=4 SV=2
Gene Ontology
ID GO:0009507
description elongation factor p (ef-p) family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51863: 38988-50099 , PASA_asmbl_51864: 45621-45901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000633_020 0.0 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
2 Hb_146673_010 0.0656604826 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
3 Hb_004410_080 0.0702534178 - - cellular nucleic acid binding protein, putative [Ricinus communis]
4 Hb_004096_090 0.0732361198 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
5 Hb_011512_070 0.0786528997 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
6 Hb_004157_020 0.079808245 - - PREDICTED: histone H2B-like [Gossypium raimondii]
7 Hb_000236_390 0.0817236251 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
8 Hb_001195_480 0.0849718553 - - cop9 complex subunit, putative [Ricinus communis]
9 Hb_000656_240 0.0870277532 - - proteasome subunit alpha type, putative [Ricinus communis]
10 Hb_000529_030 0.0871344173 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_004453_170 0.0889767763 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
12 Hb_010106_010 0.0897566582 - - PREDICTED: cucumisin-like [Populus euphratica]
13 Hb_012565_070 0.0901175788 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_003077_020 0.0905663025 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000367_160 0.0914779457 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
16 Hb_003018_010 0.0915730726 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
17 Hb_000035_370 0.09525133 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000193_110 0.0957347462 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
19 Hb_018133_020 0.0976104717 - - transporter, putative [Ricinus communis]
20 Hb_002477_300 0.0976588258 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000633_020 Hb_000633_020 Hb_146673_010 Hb_146673_010 Hb_000633_020--Hb_146673_010 Hb_004410_080 Hb_004410_080 Hb_000633_020--Hb_004410_080 Hb_004096_090 Hb_004096_090 Hb_000633_020--Hb_004096_090 Hb_011512_070 Hb_011512_070 Hb_000633_020--Hb_011512_070 Hb_004157_020 Hb_004157_020 Hb_000633_020--Hb_004157_020 Hb_000236_390 Hb_000236_390 Hb_000633_020--Hb_000236_390 Hb_002477_300 Hb_002477_300 Hb_146673_010--Hb_002477_300 Hb_000465_090 Hb_000465_090 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_000731_160 Hb_000731_160 Hb_146673_010--Hb_000731_160 Hb_000656_240 Hb_000656_240 Hb_004410_080--Hb_000656_240 Hb_004410_080--Hb_004157_020 Hb_032264_070 Hb_032264_070 Hb_004410_080--Hb_032264_070 Hb_011519_010 Hb_011519_010 Hb_004410_080--Hb_011519_010 Hb_000367_160 Hb_000367_160 Hb_004410_080--Hb_000367_160 Hb_001195_480 Hb_001195_480 Hb_004096_090--Hb_001195_480 Hb_004116_060 Hb_004116_060 Hb_004096_090--Hb_004116_060 Hb_009694_010 Hb_009694_010 Hb_004096_090--Hb_009694_010 Hb_005054_060 Hb_005054_060 Hb_004096_090--Hb_005054_060 Hb_010222_020 Hb_010222_020 Hb_004096_090--Hb_010222_020 Hb_011512_070--Hb_000656_240 Hb_002226_060 Hb_002226_060 Hb_011512_070--Hb_002226_060 Hb_000529_030 Hb_000529_030 Hb_011512_070--Hb_000529_030 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_004889_020 Hb_004889_020 Hb_004157_020--Hb_004889_020 Hb_018133_020 Hb_018133_020 Hb_004157_020--Hb_018133_020 Hb_000676_390 Hb_000676_390 Hb_004157_020--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_004157_020--Hb_026889_030 Hb_000236_390--Hb_000529_030 Hb_000236_390--Hb_001195_480 Hb_004453_170 Hb_004453_170 Hb_000236_390--Hb_004453_170 Hb_000622_180 Hb_000622_180 Hb_000236_390--Hb_000622_180 Hb_001016_150 Hb_001016_150 Hb_000236_390--Hb_001016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6869 7.58011 18.8734 7.29784 8.38563 10.9525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2966 25.6267 10.0607 5.59586 8.30726

CAGE analysis