Hb_000634_050

Information

Type -
Description -
Location Contig634: 56470-57304
Sequence    

Annotation

kegg
ID cam:101510790
description uncharacterized LOC101510790
nr
ID XP_012075338.1
description PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LC53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51872: 56697-57286 , PASA_asmbl_51873: 56434-57270 , PASA_asmbl_51874: 56699-57175
cDNA
(Sanger)
(ID:Location)		 005_A09.ab1: 56697-57286 , 026_H13.ab1: 56697-57259

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000634_050 0.0 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
2 Hb_000417_110 0.0598811678 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
3 Hb_000045_190 0.0661001671 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
4 Hb_001584_070 0.0661499382 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002781_020 0.067226876 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
6 Hb_000798_030 0.0722181835 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
7 Hb_000526_150 0.0744452492 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
8 Hb_002234_210 0.0823489358 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
9 Hb_012515_010 0.0826694232 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
10 Hb_011609_180 0.082915265 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
11 Hb_000362_210 0.0836786614 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
12 Hb_000085_200 0.0841604198 - - ATP synthase subunit H protein [Hevea brasiliensis]
13 Hb_010883_150 0.0850723789 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
14 Hb_001454_330 0.0888703259 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
15 Hb_000479_180 0.0899482008 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000545_150 0.0912116042 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
17 Hb_008847_020 0.0915216227 - - 40S ribosomal protein S17C [Hevea brasiliensis]
18 Hb_000563_590 0.0915643463 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
19 Hb_002447_030 0.091751359 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
20 Hb_000365_380 0.0927458539 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000634_050 Hb_000634_050 Hb_000417_110 Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000417_110--Hb_000798_030 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000045_190--Hb_002529_100 Hb_000465_060 Hb_000465_060 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_010172_030 Hb_010172_030 Hb_002781_020--Hb_010172_030 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_000362_210 Hb_000362_210 Hb_002781_020--Hb_000362_210 Hb_002781_020--Hb_000045_190 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.347 17.4161 20.4888 22.3445 67.4421 94.5424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
173.112 199.547 73.2639 30.2315 10.4559

CAGE analysis