Hb_000634_100

Information

Type -
Description -
Location Contig634: 165577-168436
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013350mg
description hypothetical protein
nr
ID XP_007209764.1
description hypothetical protein PRUPE_ppa013350mg [Prunus persica]
swissprot
ID Q5QM99
description 60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1
trembl
ID M5WNW1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1
Gene Ontology
ID GO:0022625
description 60s ribosomal protein l37a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51877: 165545-168261 , PASA_asmbl_51879: 166938-167264
cDNA
(Sanger)
(ID:Location)		 003_B21.ab1: 165543-168190 , 025_J20.ab1: 165545-168119 , 034_F22.ab1: 165549-168215 , 035_D03.ab1: 165543-168192 , 039_C24.ab1: 165539-168192 , 049_E11.ab1: 165545-168119

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000634_100 0.0 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
2 Hb_003376_120 0.0624351985 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
3 Hb_023386_080 0.0665596506 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
4 Hb_000329_040 0.0803773181 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
5 Hb_005333_130 0.0836704377 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003408_030 0.0905733402 - - PREDICTED: protein YIF1B [Jatropha curcas]
7 Hb_044662_070 0.0916004353 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
8 Hb_007924_020 0.0966503153 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_004951_040 0.097849544 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
10 Hb_000270_270 0.0986280723 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
11 Hb_000412_110 0.0992007935 - - Rop4 [Hevea brasiliensis]
12 Hb_000260_080 0.0996002935 - - thioredoxin H-type 1 [Hevea brasiliensis]
13 Hb_003018_200 0.099666472 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
14 Hb_004108_050 0.1016224747 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
15 Hb_008289_060 0.1028090546 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
16 Hb_000436_050 0.1035414534 - - PREDICTED: INO80 complex subunit C [Jatropha curcas]
17 Hb_000883_050 0.1038742522 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
18 Hb_007101_150 0.1054026568 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
19 Hb_065500_050 0.1063557225 - - lipoate-protein ligase B, putative [Ricinus communis]
20 Hb_000861_040 0.1080889151 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000634_100 Hb_000634_100 Hb_003376_120 Hb_003376_120 Hb_000634_100--Hb_003376_120 Hb_023386_080 Hb_023386_080 Hb_000634_100--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000634_100--Hb_000329_040 Hb_005333_130 Hb_005333_130 Hb_000634_100--Hb_005333_130 Hb_003408_030 Hb_003408_030 Hb_000634_100--Hb_003408_030 Hb_044662_070 Hb_044662_070 Hb_000634_100--Hb_044662_070 Hb_003376_120--Hb_003408_030 Hb_003376_120--Hb_023386_080 Hb_003376_120--Hb_044662_070 Hb_007924_020 Hb_007924_020 Hb_003376_120--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003376_120--Hb_000627_120 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_023386_080--Hb_000329_040 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_023386_080--Hb_000376_050 Hb_000260_080 Hb_000260_080 Hb_000329_040--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000329_040--Hb_011794_070 Hb_000329_040--Hb_000376_050 Hb_000703_140 Hb_000703_140 Hb_000329_040--Hb_000703_140 Hb_004899_320 Hb_004899_320 Hb_000329_040--Hb_004899_320 Hb_008453_090 Hb_008453_090 Hb_005333_130--Hb_008453_090 Hb_003018_200 Hb_003018_200 Hb_005333_130--Hb_003018_200 Hb_004951_040 Hb_004951_040 Hb_005333_130--Hb_004951_040 Hb_005333_130--Hb_023386_080 Hb_003216_100 Hb_003216_100 Hb_005333_130--Hb_003216_100 Hb_000753_130 Hb_000753_130 Hb_003408_030--Hb_000753_130 Hb_000861_040 Hb_000861_040 Hb_003408_030--Hb_000861_040 Hb_002527_070 Hb_002527_070 Hb_003408_030--Hb_002527_070 Hb_003408_030--Hb_007924_020 Hb_003408_030--Hb_000627_120 Hb_004108_230 Hb_004108_230 Hb_044662_070--Hb_004108_230 Hb_044662_070--Hb_007924_020 Hb_003175_040 Hb_003175_040 Hb_044662_070--Hb_003175_040 Hb_003408_020 Hb_003408_020 Hb_044662_070--Hb_003408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
578.879 124.965 168.661 127.478 489.982 311.488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
601.95 799.177 838.71 123.66 83.9567

CAGE analysis