Hb_000635_040

Information

Type -
Description -
Location Contig635: 19756-24263
Sequence    

Annotation

kegg
ID rcu:RCOM_1080750
description hypothetical protein
nr
ID XP_012085659.1
description PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
swissprot
ID Q8GYF7
description Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana GN=NUP54 PE=1 SV=1
trembl
ID A0A067JSD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17945 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup54

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51896: 19797-23958 , PASA_asmbl_51897: 24882-25163 , PASA_asmbl_51900: 25191-35545 , PASA_asmbl_51901: 25191-35545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_040 0.0 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
2 Hb_007800_020 0.0535782426 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
3 Hb_000130_420 0.0694251774 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
4 Hb_000046_570 0.0706785403 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
5 Hb_000362_170 0.072511618 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
6 Hb_000567_190 0.0759219262 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
7 Hb_008226_090 0.0763432699 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
8 Hb_005895_010 0.0770969931 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
9 Hb_005381_020 0.0784102092 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
10 Hb_001002_060 0.080587419 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
11 Hb_000494_080 0.0818794373 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
12 Hb_000214_050 0.0828110059 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
13 Hb_002311_380 0.0829774996 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
14 Hb_002814_110 0.0839532322 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
15 Hb_000737_030 0.0847641984 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
16 Hb_007062_040 0.0850848053 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
17 Hb_000390_250 0.0860921926 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
18 Hb_000205_130 0.0867385051 - - calcium ion binding protein, putative [Ricinus communis]
19 Hb_000322_070 0.087062706 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
20 Hb_003929_170 0.0874660975 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000635_040 Hb_000635_040 Hb_007800_020 Hb_007800_020 Hb_000635_040--Hb_007800_020 Hb_000130_420 Hb_000130_420 Hb_000635_040--Hb_000130_420 Hb_000046_570 Hb_000046_570 Hb_000635_040--Hb_000046_570 Hb_000362_170 Hb_000362_170 Hb_000635_040--Hb_000362_170 Hb_000567_190 Hb_000567_190 Hb_000635_040--Hb_000567_190 Hb_008226_090 Hb_008226_090 Hb_000635_040--Hb_008226_090 Hb_000640_070 Hb_000640_070 Hb_007800_020--Hb_000640_070 Hb_005895_010 Hb_005895_010 Hb_007800_020--Hb_005895_010 Hb_007800_020--Hb_000362_170 Hb_000608_350 Hb_000608_350 Hb_007800_020--Hb_000608_350 Hb_001002_060 Hb_001002_060 Hb_007800_020--Hb_001002_060 Hb_004912_030 Hb_004912_030 Hb_000130_420--Hb_004912_030 Hb_000130_420--Hb_000362_170 Hb_011972_020 Hb_011972_020 Hb_000130_420--Hb_011972_020 Hb_002014_040 Hb_002014_040 Hb_000130_420--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_000130_420--Hb_000238_040 Hb_007062_040 Hb_007062_040 Hb_000046_570--Hb_007062_040 Hb_004586_060 Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_001405_210 Hb_001405_210 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_000362_170--Hb_005895_010 Hb_000362_170--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000362_170--Hb_001005_030 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_000879_180 Hb_000879_180 Hb_000567_190--Hb_000879_180 Hb_001635_040 Hb_001635_040 Hb_000567_190--Hb_001635_040 Hb_010362_030 Hb_010362_030 Hb_000567_190--Hb_010362_030 Hb_000567_190--Hb_000130_420 Hb_001761_120 Hb_001761_120 Hb_000567_190--Hb_001761_120 Hb_005723_020 Hb_005723_020 Hb_008226_090--Hb_005723_020 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_001135_120 Hb_001135_120 Hb_008226_090--Hb_001135_120 Hb_103747_020 Hb_103747_020 Hb_008226_090--Hb_103747_020 Hb_008226_090--Hb_003912_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2708 12.3278 14.7413 16.2568 10.6362 9.95618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79912 6.09009 6.28783 5.91298 8.69753

CAGE analysis