Hb_000635_050

Information

Type -
Description -
Location Contig635: 25087-34732
Sequence    

Annotation

kegg
ID rcu:RCOM_1080740
description Protein AFR, putative
nr
ID XP_012085660.1
description PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
swissprot
ID Q9CAG8
description F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1
trembl
ID A0A067JVH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17946 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51897: 24882-25163 , PASA_asmbl_51898: 26560-35324 , PASA_asmbl_51899: 27401-27810 , PASA_asmbl_51900: 25191-35545 , PASA_asmbl_51901: 25191-35545 , PASA_asmbl_51902: 26434-26558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_050 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
2 Hb_000357_070 0.1059544481 - - -
3 Hb_004678_010 0.107731271 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
4 Hb_017098_040 0.1100114995 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
5 Hb_002026_030 0.1113737483 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_007765_130 0.1114489789 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
7 Hb_003055_070 0.116731641 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
8 Hb_112064_010 0.1170093768 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
9 Hb_003912_080 0.1174751733 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
10 Hb_034579_020 0.1206088068 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001775_120 0.1220032706 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
12 Hb_002740_100 0.1242345591 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
13 Hb_025045_010 0.1273106091 - - catalytic, putative [Ricinus communis]
14 Hb_093077_010 0.1275705919 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
15 Hb_009449_100 0.1281257661 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
16 Hb_005724_040 0.1289007908 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
17 Hb_001153_100 0.1289955221 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
18 Hb_002675_080 0.1291263778 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
19 Hb_004330_020 0.1294465528 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
20 Hb_031385_010 0.1310938327 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000635_050 Hb_000635_050 Hb_000357_070 Hb_000357_070 Hb_000635_050--Hb_000357_070 Hb_004678_010 Hb_004678_010 Hb_000635_050--Hb_004678_010 Hb_017098_040 Hb_017098_040 Hb_000635_050--Hb_017098_040 Hb_002026_030 Hb_002026_030 Hb_000635_050--Hb_002026_030 Hb_007765_130 Hb_007765_130 Hb_000635_050--Hb_007765_130 Hb_003055_070 Hb_003055_070 Hb_000635_050--Hb_003055_070 Hb_034579_020 Hb_034579_020 Hb_000357_070--Hb_034579_020 Hb_000388_080 Hb_000388_080 Hb_000357_070--Hb_000388_080 Hb_002028_110 Hb_002028_110 Hb_000357_070--Hb_002028_110 Hb_002675_080 Hb_002675_080 Hb_000357_070--Hb_002675_080 Hb_000283_140 Hb_000283_140 Hb_000357_070--Hb_000283_140 Hb_004678_010--Hb_017098_040 Hb_003912_080 Hb_003912_080 Hb_004678_010--Hb_003912_080 Hb_004678_010--Hb_002026_030 Hb_001141_060 Hb_001141_060 Hb_004678_010--Hb_001141_060 Hb_004678_010--Hb_002675_080 Hb_017098_040--Hb_002675_080 Hb_017098_040--Hb_000357_070 Hb_000915_130 Hb_000915_130 Hb_017098_040--Hb_000915_130 Hb_017098_040--Hb_000283_140 Hb_000665_200 Hb_000665_200 Hb_002026_030--Hb_000665_200 Hb_001969_130 Hb_001969_130 Hb_002026_030--Hb_001969_130 Hb_001124_140 Hb_001124_140 Hb_002026_030--Hb_001124_140 Hb_004052_110 Hb_004052_110 Hb_002026_030--Hb_004052_110 Hb_002026_030--Hb_002675_080 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_007765_130--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_007765_130--Hb_001365_030 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_000679_080 Hb_000679_080 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140 Hb_000940_030 Hb_000940_030 Hb_003055_070--Hb_000940_030 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_003055_070--Hb_000005_100 Hb_003055_070--Hb_000093_140 Hb_004223_270 Hb_004223_270 Hb_003055_070--Hb_004223_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34632 18.8864 32.2375 29.2227 1.80203 3.11029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.703914 1.84024 2.23577 11.0749 32.127

CAGE analysis