Hb_000635_060

Information

Type -
Description -
Location Contig635: 40414-44257
Sequence    

Annotation

kegg
ID rcu:RCOM_1080720
description GTP binding protein, putative
nr
ID XP_012085661.1
description PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
swissprot
ID B0JW21
description Putative ribosome biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) GN=rsgA PE=3 SV=1
trembl
ID A0A067K4R3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17947 PE=3 SV=1
Gene Ontology
ID GO:0003924
description ribosome biogenesis gtpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51904: 40501-44315 , PASA_asmbl_51905: 41433-41672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_060 0.0 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
2 Hb_002539_070 0.0728478727 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
3 Hb_001716_040 0.0730826253 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
4 Hb_001478_010 0.074948865 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
5 Hb_002686_090 0.0749982651 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
6 Hb_000482_040 0.0755176836 - - Protein YME1, putative [Ricinus communis]
7 Hb_000504_180 0.0756720448 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
8 Hb_001975_150 0.0758880816 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
9 Hb_000640_040 0.0779091643 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
10 Hb_000445_090 0.0787243474 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
11 Hb_004218_180 0.0802886144 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
12 Hb_003943_110 0.0803826523 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
13 Hb_008033_040 0.0829364624 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
14 Hb_000046_540 0.0838863585 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
15 Hb_001157_240 0.0852184322 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_073171_070 0.0857892365 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
17 Hb_000365_240 0.0867370284 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
18 Hb_001163_060 0.0898368018 - - neutral/alkaline invertase [Manihot esculenta]
19 Hb_009778_060 0.0898432145 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
20 Hb_000805_100 0.0901521806 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000635_060 Hb_000635_060 Hb_002539_070 Hb_002539_070 Hb_000635_060--Hb_002539_070 Hb_001716_040 Hb_001716_040 Hb_000635_060--Hb_001716_040 Hb_001478_010 Hb_001478_010 Hb_000635_060--Hb_001478_010 Hb_002686_090 Hb_002686_090 Hb_000635_060--Hb_002686_090 Hb_000482_040 Hb_000482_040 Hb_000635_060--Hb_000482_040 Hb_000504_180 Hb_000504_180 Hb_000635_060--Hb_000504_180 Hb_004374_110 Hb_004374_110 Hb_002539_070--Hb_004374_110 Hb_003943_110 Hb_003943_110 Hb_002539_070--Hb_003943_110 Hb_000445_090 Hb_000445_090 Hb_002539_070--Hb_000445_090 Hb_012632_010 Hb_012632_010 Hb_002539_070--Hb_012632_010 Hb_000365_240 Hb_000365_240 Hb_002539_070--Hb_000365_240 Hb_000640_040 Hb_000640_040 Hb_001716_040--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_001716_040--Hb_003943_110 Hb_001716_040--Hb_000504_180 Hb_001478_010--Hb_001716_040 Hb_001478_010--Hb_002686_090 Hb_001478_010--Hb_000640_040 Hb_001975_150 Hb_001975_150 Hb_001478_010--Hb_001975_150 Hb_000805_100 Hb_000805_100 Hb_001478_010--Hb_000805_100 Hb_002686_090--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_002686_090--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_002686_090--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_002686_090--Hb_000170_130 Hb_009778_060 Hb_009778_060 Hb_000482_040--Hb_009778_060 Hb_000482_040--Hb_002686_090 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_000504_180--Hb_001975_150 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_000504_180--Hb_005582_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.01316 6.7625 5.70651 6.27638 4.19639 3.72706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52622 5.49426 6.77977 7.63419 12.5665

CAGE analysis