Hb_000635_080

Information

Type -
Description -
Location Contig635: 49056-51914
Sequence    

Annotation

kegg
ID cmo:103488896
description 60S ribosomal protein L17-2
nr
ID ADR71274.1
description 60S ribosomal protein L17A [Hevea brasiliensis]
swissprot
ID P51413
description 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2
trembl
ID I3NMN7
description 60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l17-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51908: 49098-51920 , PASA_asmbl_51909: 50917-51189
cDNA
(Sanger)
(ID:Location)		 006_C05.ab1: 49246-51920 , 017_J16.ab1: 49360-51920 , 030_J05.ab1: 49211-50140 , 031_D16.ab1: 49333-51920 , 036_M18.ab1: 49186-50140

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_080 0.0 - - 60S ribosomal protein L17A [Hevea brasiliensis]
2 Hb_001377_380 0.0585311354 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
3 Hb_000780_210 0.0654062571 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
4 Hb_002248_100 0.0682881776 - - hypothetical protein VITISV_027197 [Vitis vinifera]
5 Hb_006588_080 0.0766583349 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
6 Hb_004545_130 0.0786605297 - - uncharacterized protein LOC100305465 [Glycine max]
7 Hb_002316_120 0.0789871545 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
8 Hb_000172_420 0.0847755449 - - 60S ribosomal protein L30, putative [Ricinus communis]
9 Hb_004735_050 0.087816263 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
10 Hb_000789_110 0.0883426041 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
11 Hb_000300_390 0.0901578341 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
12 Hb_001780_050 0.0990899908 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
13 Hb_183086_040 0.1001008121 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
14 Hb_005000_180 0.1045409055 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
15 Hb_001017_070 0.1050712604 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001434_070 0.1070808558 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
17 Hb_012539_020 0.1075678495 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
18 Hb_000163_130 0.1080462182 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
19 Hb_000820_130 0.1088962695 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
20 Hb_000270_720 0.1095036994 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]

Gene co-expression network

sample Hb_000635_080 Hb_000635_080 Hb_001377_380 Hb_001377_380 Hb_000635_080--Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_000635_080--Hb_000780_210 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000635_080--Hb_006588_080 Hb_004545_130 Hb_004545_130 Hb_000635_080--Hb_004545_130 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120 Hb_001377_380--Hb_000780_210 Hb_001377_380--Hb_002316_120 Hb_001377_380--Hb_004545_130 Hb_000789_110 Hb_000789_110 Hb_001377_380--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_001377_380--Hb_000300_390 Hb_183086_040 Hb_183086_040 Hb_000780_210--Hb_183086_040 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_000172_420 Hb_000172_420 Hb_002248_100--Hb_000172_420 Hb_007943_140 Hb_007943_140 Hb_002248_100--Hb_007943_140 Hb_002248_100--Hb_006588_080 Hb_010827_020 Hb_010827_020 Hb_002248_100--Hb_010827_020 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_006588_080--Hb_002316_120 Hb_006588_080--Hb_000172_420 Hb_000617_110 Hb_000617_110 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030 Hb_002316_120--Hb_000789_110 Hb_002316_120--Hb_000300_390 Hb_000270_720 Hb_000270_720 Hb_002316_120--Hb_000270_720 Hb_002316_120--Hb_012539_020 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.0101 30.1878 50.323 112.598 72.5486 111.699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
550.743 929.102 289.645 183.015 44.9357

CAGE analysis