Hb_000635_090

Information

Type -
Description -
Location Contig635: 52214-56894
Sequence    

Annotation

kegg
ID rcu:RCOM_1430320
description catalytic, putative
nr
ID XP_012085667.1
description PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID A0A067JSE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17950 PE=4 SV=1
Gene Ontology
ID GO:0016757
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51911: 52561-54912 , PASA_asmbl_51912: 52955-53918 , PASA_asmbl_51913: 55909-56087
cDNA
(Sanger)
(ID:Location)		 031_D16r.ab1: 49304-51874

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_090 0.0 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
2 Hb_001518_080 0.0564343024 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
3 Hb_002027_080 0.0626018091 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
4 Hb_000103_340 0.0680768955 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
5 Hb_006913_020 0.0721952942 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
6 Hb_000270_190 0.0738431494 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
7 Hb_000773_040 0.0756500603 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
8 Hb_003581_200 0.0762536274 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
9 Hb_000214_050 0.0776954213 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
10 Hb_031091_020 0.0802649488 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
11 Hb_000078_140 0.0811858515 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
12 Hb_003098_070 0.0828214136 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
13 Hb_004324_360 0.0830292083 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
14 Hb_005214_140 0.083488793 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
15 Hb_002326_040 0.0838269757 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
16 Hb_003498_080 0.0846075396 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
17 Hb_170416_010 0.0846903275 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
18 Hb_001301_270 0.0855534088 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
19 Hb_003430_050 0.0857938303 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
20 Hb_033312_040 0.0859598553 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000635_090 Hb_000635_090 Hb_001518_080 Hb_001518_080 Hb_000635_090--Hb_001518_080 Hb_002027_080 Hb_002027_080 Hb_000635_090--Hb_002027_080 Hb_000103_340 Hb_000103_340 Hb_000635_090--Hb_000103_340 Hb_006913_020 Hb_006913_020 Hb_000635_090--Hb_006913_020 Hb_000270_190 Hb_000270_190 Hb_000635_090--Hb_000270_190 Hb_000773_040 Hb_000773_040 Hb_000635_090--Hb_000773_040 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_001518_080--Hb_002027_080 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_002027_080--Hb_000773_040 Hb_000103_340--Hb_000214_050 Hb_001018_090 Hb_001018_090 Hb_000103_340--Hb_001018_090 Hb_005214_140 Hb_005214_140 Hb_000103_340--Hb_005214_140 Hb_006275_020 Hb_006275_020 Hb_000103_340--Hb_006275_020 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010 Hb_007413_010 Hb_007413_010 Hb_006913_020--Hb_007413_010 Hb_021374_030 Hb_021374_030 Hb_006913_020--Hb_021374_030 Hb_008948_020 Hb_008948_020 Hb_006913_020--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_006913_020--Hb_001377_190 Hb_001789_110 Hb_001789_110 Hb_006913_020--Hb_001789_110 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070 Hb_000270_190--Hb_000773_040 Hb_073171_070 Hb_073171_070 Hb_000270_190--Hb_073171_070 Hb_000270_190--Hb_005214_140 Hb_003040_050 Hb_003040_050 Hb_000270_190--Hb_003040_050 Hb_004324_360 Hb_004324_360 Hb_000270_190--Hb_004324_360 Hb_001329_250 Hb_001329_250 Hb_000270_190--Hb_001329_250 Hb_000773_040--Hb_073171_070 Hb_000317_100 Hb_000317_100 Hb_000773_040--Hb_000317_100 Hb_000409_050 Hb_000409_050 Hb_000773_040--Hb_000409_050 Hb_002890_130 Hb_002890_130 Hb_000773_040--Hb_002890_130 Hb_000773_040--Hb_003040_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83437 2.88986 4.47131 3.93906 1.93243 3.20769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59633 2.13265 3.16469 3.05382 4.76522

CAGE analysis