Hb_000635_100

Information

Type -
Description -
Location Contig635: 58099-58405
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_100 0.0 - - -
2 Hb_001430_040 0.0724550548 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
3 Hb_003968_030 0.0750012209 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_000639_010 0.0835960276 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
5 Hb_000186_150 0.0898973147 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
6 Hb_010264_020 0.0995315289 - - unnamed protein product [Vitis vinifera]
7 Hb_001277_010 0.1054471689 - - unknown [Populus trichocarpa]
8 Hb_032572_010 0.111213048 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
9 Hb_149507_010 0.1164761484 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
10 Hb_003124_050 0.1191938636 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
11 Hb_146036_010 0.1226267171 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
12 Hb_027506_030 0.1233621058 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
13 Hb_004804_010 0.1237364068 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
14 Hb_168561_010 0.1313485997 - - PREDICTED: notchless protein homolog [Jatropha curcas]
15 Hb_000152_880 0.1406307657 - - -
16 Hb_000303_060 0.1416049175 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_085962_010 0.1456697458 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
18 Hb_127839_010 0.1461092309 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
19 Hb_011709_010 0.1464282411 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
20 Hb_009456_010 0.1480133221 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_000635_100 Hb_000635_100 Hb_001430_040 Hb_001430_040 Hb_000635_100--Hb_001430_040 Hb_003968_030 Hb_003968_030 Hb_000635_100--Hb_003968_030 Hb_000639_010 Hb_000639_010 Hb_000635_100--Hb_000639_010 Hb_000186_150 Hb_000186_150 Hb_000635_100--Hb_000186_150 Hb_010264_020 Hb_010264_020 Hb_000635_100--Hb_010264_020 Hb_001277_010 Hb_001277_010 Hb_000635_100--Hb_001277_010 Hb_001430_040--Hb_000186_150 Hb_003124_050 Hb_003124_050 Hb_001430_040--Hb_003124_050 Hb_001430_040--Hb_003968_030 Hb_146036_010 Hb_146036_010 Hb_001430_040--Hb_146036_010 Hb_001430_040--Hb_010264_020 Hb_003968_030--Hb_146036_010 Hb_003968_030--Hb_000186_150 Hb_149507_010 Hb_149507_010 Hb_003968_030--Hb_149507_010 Hb_005332_160 Hb_005332_160 Hb_003968_030--Hb_005332_160 Hb_168561_010 Hb_168561_010 Hb_000639_010--Hb_168561_010 Hb_000639_010--Hb_001277_010 Hb_006499_020 Hb_006499_020 Hb_000639_010--Hb_006499_020 Hb_007101_140 Hb_007101_140 Hb_000639_010--Hb_007101_140 Hb_032572_010 Hb_032572_010 Hb_000639_010--Hb_032572_010 Hb_000186_150--Hb_003124_050 Hb_000186_150--Hb_146036_010 Hb_002783_180 Hb_002783_180 Hb_000186_150--Hb_002783_180 Hb_027506_030 Hb_027506_030 Hb_010264_020--Hb_027506_030 Hb_000303_060 Hb_000303_060 Hb_010264_020--Hb_000303_060 Hb_085962_010 Hb_085962_010 Hb_010264_020--Hb_085962_010 Hb_004804_010 Hb_004804_010 Hb_010264_020--Hb_004804_010 Hb_010264_020--Hb_032572_010 Hb_001396_030 Hb_001396_030 Hb_010264_020--Hb_001396_030 Hb_001104_220 Hb_001104_220 Hb_001277_010--Hb_001104_220 Hb_001277_010--Hb_149507_010 Hb_001269_660 Hb_001269_660 Hb_001277_010--Hb_001269_660 Hb_000941_110 Hb_000941_110 Hb_001277_010--Hb_000941_110 Hb_008441_010 Hb_008441_010 Hb_001277_010--Hb_008441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.971928 2.32585 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.609663 1.22264

CAGE analysis