Hb_000635_140

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig635: 84796-85221
Sequence    

Annotation

kegg
ID rcu:RCOM_1080560
description DNA binding protein, putative
nr
ID XP_002514923.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FGP7
description Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1
trembl
ID B9RMF4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1080560 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna polymerase epsilon subunit c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_140 0.0 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
2 Hb_010897_030 0.1234599932 - - conserved hypothetical protein [Ricinus communis]
3 Hb_013839_010 0.1624935234 - - Angio-associated migratory cell protein, putative [Ricinus communis]
4 Hb_023536_010 0.1674662004 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
5 Hb_009493_010 0.1721271629 - - Minor allergen Alt a, putative [Ricinus communis]
6 Hb_023732_060 0.1721874653 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
7 Hb_004994_260 0.1744864307 - - Remorin, putative [Ricinus communis]
8 Hb_002603_060 0.1766159886 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
9 Hb_003893_090 0.1798319486 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
10 Hb_023386_010 0.1811088123 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
11 Hb_008699_020 0.1871939187 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
12 Hb_001481_120 0.1877171248 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
13 Hb_000212_470 0.1879064401 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
14 Hb_029904_040 0.1879195196 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
15 Hb_000561_020 0.1890356512 - - hypothetical protein JCGZ_19196 [Jatropha curcas]
16 Hb_116608_010 0.1906438833 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
17 Hb_115825_010 0.1910907372 - - phosphate transporter [Manihot esculenta]
18 Hb_003125_150 0.1928057217 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
19 Hb_000987_070 0.1964964313 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
20 Hb_000010_210 0.1970877892 - - PREDICTED: centromere protein X [Jatropha curcas]

Gene co-expression network

sample Hb_000635_140 Hb_000635_140 Hb_010897_030 Hb_010897_030 Hb_000635_140--Hb_010897_030 Hb_013839_010 Hb_013839_010 Hb_000635_140--Hb_013839_010 Hb_023536_010 Hb_023536_010 Hb_000635_140--Hb_023536_010 Hb_009493_010 Hb_009493_010 Hb_000635_140--Hb_009493_010 Hb_023732_060 Hb_023732_060 Hb_000635_140--Hb_023732_060 Hb_004994_260 Hb_004994_260 Hb_000635_140--Hb_004994_260 Hb_002603_060 Hb_002603_060 Hb_010897_030--Hb_002603_060 Hb_001123_210 Hb_001123_210 Hb_010897_030--Hb_001123_210 Hb_010897_030--Hb_023536_010 Hb_029904_040 Hb_029904_040 Hb_010897_030--Hb_029904_040 Hb_000896_120 Hb_000896_120 Hb_010897_030--Hb_000896_120 Hb_000451_060 Hb_000451_060 Hb_013839_010--Hb_000451_060 Hb_153544_010 Hb_153544_010 Hb_013839_010--Hb_153544_010 Hb_000191_030 Hb_000191_030 Hb_013839_010--Hb_000191_030 Hb_008699_020 Hb_008699_020 Hb_013839_010--Hb_008699_020 Hb_116608_010 Hb_116608_010 Hb_013839_010--Hb_116608_010 Hb_001277_320 Hb_001277_320 Hb_013839_010--Hb_001277_320 Hb_023536_010--Hb_009493_010 Hb_003893_090 Hb_003893_090 Hb_023536_010--Hb_003893_090 Hb_002798_060 Hb_002798_060 Hb_023536_010--Hb_002798_060 Hb_001329_210 Hb_001329_210 Hb_023536_010--Hb_001329_210 Hb_009486_190 Hb_009486_190 Hb_023536_010--Hb_009486_190 Hb_009493_010--Hb_010897_030 Hb_002909_060 Hb_002909_060 Hb_009493_010--Hb_002909_060 Hb_002600_100 Hb_002600_100 Hb_009493_010--Hb_002600_100 Hb_009493_010--Hb_003893_090 Hb_000656_340 Hb_000656_340 Hb_023732_060--Hb_000656_340 Hb_021924_010 Hb_021924_010 Hb_023732_060--Hb_021924_010 Hb_003226_220 Hb_003226_220 Hb_023732_060--Hb_003226_220 Hb_000975_180 Hb_000975_180 Hb_023732_060--Hb_000975_180 Hb_003988_040 Hb_003988_040 Hb_023732_060--Hb_003988_040 Hb_023386_010 Hb_023386_010 Hb_023732_060--Hb_023386_010 Hb_002214_050 Hb_002214_050 Hb_004994_260--Hb_002214_050 Hb_000907_090 Hb_000907_090 Hb_004994_260--Hb_000907_090 Hb_007926_060 Hb_007926_060 Hb_004994_260--Hb_007926_060 Hb_010344_040 Hb_010344_040 Hb_004994_260--Hb_010344_040 Hb_000722_040 Hb_000722_040 Hb_004994_260--Hb_000722_040 Hb_004994_260--Hb_023386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23837 1.88015 0.413846 3.84166 1.24754 1.36327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.43801 6.53769 2.49465 1.29697 0

CAGE analysis