Hb_000635_180

Information

Type -
Description -
Location Contig635: 123083-127540
Sequence    

Annotation

kegg
ID rcu:RCOM_1080420
description hypothetical protein
nr
ID XP_012085674.1
description PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q54GB2
description CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1
trembl
ID A0A067K4R9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17957 PE=4 SV=1
Gene Ontology
ID GO:0005694
description ctd small phosphatase-like protein 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51920: 121617-124595 , PASA_asmbl_51921: 123497-123657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_180 0.0 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
2 Hb_002284_010 0.0744624878 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002301_140 0.0759069179 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
4 Hb_028995_040 0.0769144988 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
5 Hb_005941_040 0.0782492031 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
6 Hb_030736_080 0.078830879 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001235_190 0.0822535123 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
8 Hb_000510_130 0.082622905 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
9 Hb_020956_020 0.087665195 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
10 Hb_001369_640 0.0886064984 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
11 Hb_009051_030 0.0889454076 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
12 Hb_172426_040 0.089602611 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
13 Hb_000987_070 0.0901591101 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
14 Hb_007778_030 0.0913440584 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
15 Hb_065525_020 0.0917463383 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
16 Hb_000705_210 0.0920791457 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
17 Hb_003747_220 0.0925331838 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
18 Hb_003787_010 0.093340276 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
19 Hb_165132_010 0.0936952637 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
20 Hb_159809_020 0.0950396573 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000635_180 Hb_000635_180 Hb_002284_010 Hb_002284_010 Hb_000635_180--Hb_002284_010 Hb_002301_140 Hb_002301_140 Hb_000635_180--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_000635_180--Hb_028995_040 Hb_005941_040 Hb_005941_040 Hb_000635_180--Hb_005941_040 Hb_030736_080 Hb_030736_080 Hb_000635_180--Hb_030736_080 Hb_001235_190 Hb_001235_190 Hb_000635_180--Hb_001235_190 Hb_002284_010--Hb_005941_040 Hb_029866_060 Hb_029866_060 Hb_002284_010--Hb_029866_060 Hb_002163_020 Hb_002163_020 Hb_002284_010--Hb_002163_020 Hb_002284_010--Hb_002301_140 Hb_002284_010--Hb_028995_040 Hb_002301_140--Hb_028995_040 Hb_000200_100 Hb_000200_100 Hb_002301_140--Hb_000200_100 Hb_023226_040 Hb_023226_040 Hb_002301_140--Hb_023226_040 Hb_002007_060 Hb_002007_060 Hb_002301_140--Hb_002007_060 Hb_009773_020 Hb_009773_020 Hb_002301_140--Hb_009773_020 Hb_002301_140--Hb_001235_190 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_005941_040--Hb_002163_020 Hb_000445_180 Hb_000445_180 Hb_005941_040--Hb_000445_180 Hb_005941_040--Hb_028995_040 Hb_000705_210 Hb_000705_210 Hb_005941_040--Hb_000705_210 Hb_000987_070 Hb_000987_070 Hb_030736_080--Hb_000987_070 Hb_000905_060 Hb_000905_060 Hb_030736_080--Hb_000905_060 Hb_001832_060 Hb_001832_060 Hb_030736_080--Hb_001832_060 Hb_004453_170 Hb_004453_170 Hb_030736_080--Hb_004453_170 Hb_001247_100 Hb_001247_100 Hb_030736_080--Hb_001247_100 Hb_008173_090 Hb_008173_090 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60029 2.8564 2.34731 2.44913 2.17025 3.77452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.16894 6.16007 3.99605 1.78718 0.978091

CAGE analysis