Hb_000635_200

Information

Type rubber biosynthesis
Description Gene Name: SRPP5
Location Contig635: 143193-144771
Sequence    

Annotation

kegg
ID rcu:RCOM_1080400
description Small rubber particle protein, putative
nr
ID XP_012085677.1
description PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
swissprot
ID Q9FYF7
description REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1
trembl
ID A0A067JS73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17959 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51923: 143512-144833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_200 0.0 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
2 Hb_004645_070 0.0627386739 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
3 Hb_002092_070 0.0804036104 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
4 Hb_000010_420 0.0816630134 - - Callose synthase 10 [Morus notabilis]
5 Hb_002045_250 0.0834803358 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
6 Hb_004429_010 0.0840926995 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_002284_170 0.0876180859 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
8 Hb_001259_120 0.0898025512 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
9 Hb_000197_030 0.0920441183 - - hypothetical protein RCOM_1447500 [Ricinus communis]
10 Hb_000941_030 0.0923902302 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
11 Hb_027136_010 0.0952601888 - - hypothetical protein L484_010426 [Morus notabilis]
12 Hb_000334_130 0.0959451268 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
13 Hb_001259_110 0.096036795 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
14 Hb_170077_010 0.0971592199 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
15 Hb_020805_150 0.0972841651 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_000751_140 0.0974460214 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
17 Hb_005649_080 0.0975270417 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_000479_240 0.0975563117 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
19 Hb_001489_100 0.0978981859 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
20 Hb_004204_130 0.0983325965 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000635_200 Hb_000635_200 Hb_004645_070 Hb_004645_070 Hb_000635_200--Hb_004645_070 Hb_002092_070 Hb_002092_070 Hb_000635_200--Hb_002092_070 Hb_000010_420 Hb_000010_420 Hb_000635_200--Hb_000010_420 Hb_002045_250 Hb_002045_250 Hb_000635_200--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_000635_200--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000635_200--Hb_002284_170 Hb_005568_040 Hb_005568_040 Hb_004645_070--Hb_005568_040 Hb_000479_240 Hb_000479_240 Hb_004645_070--Hb_000479_240 Hb_004645_070--Hb_000010_420 Hb_000331_580 Hb_000331_580 Hb_004645_070--Hb_000331_580 Hb_001167_050 Hb_001167_050 Hb_004645_070--Hb_001167_050 Hb_002092_070--Hb_002045_250 Hb_002092_070--Hb_004429_010 Hb_002092_070--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_002092_070--Hb_001221_090 Hb_009252_050 Hb_009252_050 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_001259_120 Hb_001259_120 Hb_000010_420--Hb_001259_120 Hb_000010_420--Hb_001167_050 Hb_001341_160 Hb_001341_160 Hb_000010_420--Hb_001341_160 Hb_001904_030 Hb_001904_030 Hb_000010_420--Hb_001904_030 Hb_009615_160 Hb_009615_160 Hb_000010_420--Hb_009615_160 Hb_002045_250--Hb_004429_010 Hb_001723_140 Hb_001723_140 Hb_002045_250--Hb_001723_140 Hb_002045_250--Hb_009252_050 Hb_000046_600 Hb_000046_600 Hb_002045_250--Hb_000046_600 Hb_000529_060 Hb_000529_060 Hb_002045_250--Hb_000529_060 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_002284_170 Hb_004429_010--Hb_001221_090 Hb_002284_170--Hb_000958_150 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_002284_170--Hb_009252_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0585 63.1808 33.8366 49.0366 30.1935 35.9292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.83037 7.72084 21.7359 33.7117 30.314

CAGE analysis