Hb_000635_210

Information

Type -
Description -
Location Contig635: 145934-150419
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17150g
description POPTRDRAFT_817547; hypothetical protein
nr
ID ABK92612.1
description unknown [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P8A9
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51924: 146339-146595 , PASA_asmbl_51925: 144968-150625 , PASA_asmbl_51926: 149950-150158 , PASA_asmbl_51927: 150310-150570
cDNA
(Sanger)
(ID:Location)		 038_E10.ab1: 144970-150627

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_210 0.0 - - unknown [Populus trichocarpa]
2 Hb_001076_020 0.0930171863 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
3 Hb_000997_360 0.1068129992 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
4 Hb_000224_140 0.1109694525 - - ribonuclease z, chloroplast, putative [Ricinus communis]
5 Hb_000817_030 0.1120335267 - - mak, putative [Ricinus communis]
6 Hb_002742_090 0.1169423174 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
7 Hb_000096_150 0.1208171873 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
8 Hb_000318_160 0.1210325956 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
9 Hb_010402_050 0.12238846 - - -
10 Hb_005463_140 0.1236539061 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
11 Hb_012490_050 0.1240567265 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
12 Hb_001153_020 0.1267130295 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
13 Hb_002918_290 0.1279864335 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
14 Hb_000069_550 0.1287140554 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
15 Hb_003349_080 0.1296831565 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
16 Hb_021443_080 0.1301629041 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
17 Hb_003581_220 0.1301910617 - - unnamed protein product [Vitis vinifera]
18 Hb_009393_210 0.1307078372 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
19 Hb_001775_110 0.130879732 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
20 Hb_068056_030 0.1311805818 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]

Gene co-expression network

sample Hb_000635_210 Hb_000635_210 Hb_001076_020 Hb_001076_020 Hb_000635_210--Hb_001076_020 Hb_000997_360 Hb_000997_360 Hb_000635_210--Hb_000997_360 Hb_000224_140 Hb_000224_140 Hb_000635_210--Hb_000224_140 Hb_000817_030 Hb_000817_030 Hb_000635_210--Hb_000817_030 Hb_002742_090 Hb_002742_090 Hb_000635_210--Hb_002742_090 Hb_000096_150 Hb_000096_150 Hb_000635_210--Hb_000096_150 Hb_001076_020--Hb_000224_140 Hb_005463_140 Hb_005463_140 Hb_001076_020--Hb_005463_140 Hb_017948_010 Hb_017948_010 Hb_001076_020--Hb_017948_010 Hb_003326_020 Hb_003326_020 Hb_001076_020--Hb_003326_020 Hb_000193_120 Hb_000193_120 Hb_001076_020--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_001076_020--Hb_000181_300 Hb_000125_210 Hb_000125_210 Hb_000997_360--Hb_000125_210 Hb_001218_040 Hb_001218_040 Hb_000997_360--Hb_001218_040 Hb_021443_080 Hb_021443_080 Hb_000997_360--Hb_021443_080 Hb_001775_110 Hb_001775_110 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040 Hb_068056_030 Hb_068056_030 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_000224_140--Hb_005463_140 Hb_027625_010 Hb_027625_010 Hb_000817_030--Hb_027625_010 Hb_000817_030--Hb_002742_090 Hb_000817_030--Hb_005463_140 Hb_005883_100 Hb_005883_100 Hb_000817_030--Hb_005883_100 Hb_001519_030 Hb_001519_030 Hb_000817_030--Hb_001519_030 Hb_000817_030--Hb_017948_010 Hb_001776_160 Hb_001776_160 Hb_002742_090--Hb_001776_160 Hb_000120_020 Hb_000120_020 Hb_002742_090--Hb_000120_020 Hb_028515_010 Hb_028515_010 Hb_002742_090--Hb_028515_010 Hb_002110_200 Hb_002110_200 Hb_002742_090--Hb_002110_200 Hb_002742_090--Hb_068056_030 Hb_000056_250 Hb_000056_250 Hb_000096_150--Hb_000056_250 Hb_000096_150--Hb_000125_210 Hb_000928_130 Hb_000928_130 Hb_000096_150--Hb_000928_130 Hb_000096_150--Hb_000318_160 Hb_000673_020 Hb_000673_020 Hb_000096_150--Hb_000673_020 Hb_002026_120 Hb_002026_120 Hb_000096_150--Hb_002026_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.55647 4.29335 4.84837 15.407 14.1966 8.26103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.6941 55.9715 43.1561 16.4413 26.2401

CAGE analysis