Hb_000635_240

Information

Type -
Description -
Location Contig635: 217281-218769
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13800g
description POPTRDRAFT_548030; chlorophyll a/b-binding protein type II precursor
nr
ID XP_002299309.1
description chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
swissprot
ID P10708
description Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
trembl
ID B9GML1
description Chlorophyll a/b-binding protein type II OS=Populus trichocarpa GN=POPTR_0001s13800g PE=4 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_240 0.0 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
2 Hb_011316_080 0.0425866552 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_001546_140 0.0435382889 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
4 Hb_009771_010 0.0442068976 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
5 Hb_002245_050 0.045225436 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
6 Hb_001433_210 0.0461518015 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
7 Hb_002929_030 0.0467909208 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
8 Hb_089140_130 0.0498603883 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
9 Hb_001153_170 0.0506246803 - - PREDICTED: protein HOTHEAD [Populus euphratica]
10 Hb_000847_040 0.0578988148 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
11 Hb_000979_210 0.0579378034 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007617_030 0.0581583731 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
13 Hb_000414_040 0.0606259194 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
14 Hb_002006_080 0.0608942246 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
15 Hb_000836_620 0.0621856638 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
16 Hb_000887_030 0.0637757583 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_000174_120 0.0647232158 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_000142_050 0.0664018087 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
19 Hb_031862_210 0.066406704 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
20 Hb_004627_050 0.0672213277 - - Chlorophyll a-b binding protein 6A [Morus notabilis]

Gene co-expression network

sample Hb_000635_240 Hb_000635_240 Hb_011316_080 Hb_011316_080 Hb_000635_240--Hb_011316_080 Hb_001546_140 Hb_001546_140 Hb_000635_240--Hb_001546_140 Hb_009771_010 Hb_009771_010 Hb_000635_240--Hb_009771_010 Hb_002245_050 Hb_002245_050 Hb_000635_240--Hb_002245_050 Hb_001433_210 Hb_001433_210 Hb_000635_240--Hb_001433_210 Hb_002929_030 Hb_002929_030 Hb_000635_240--Hb_002929_030 Hb_089140_130 Hb_089140_130 Hb_011316_080--Hb_089140_130 Hb_000847_040 Hb_000847_040 Hb_011316_080--Hb_000847_040 Hb_011316_080--Hb_009771_010 Hb_001153_170 Hb_001153_170 Hb_011316_080--Hb_001153_170 Hb_011316_080--Hb_001546_140 Hb_002006_080 Hb_002006_080 Hb_011316_080--Hb_002006_080 Hb_001546_140--Hb_009771_010 Hb_007617_030 Hb_007617_030 Hb_001546_140--Hb_007617_030 Hb_001546_140--Hb_001153_170 Hb_001546_140--Hb_089140_130 Hb_001546_140--Hb_001433_210 Hb_009771_010--Hb_001153_170 Hb_009771_010--Hb_089140_130 Hb_009771_010--Hb_002929_030 Hb_009771_010--Hb_007617_030 Hb_000018_110 Hb_000018_110 Hb_002245_050--Hb_000018_110 Hb_000821_030 Hb_000821_030 Hb_002245_050--Hb_000821_030 Hb_002245_050--Hb_001433_210 Hb_000142_050 Hb_000142_050 Hb_002245_050--Hb_000142_050 Hb_002245_050--Hb_002929_030 Hb_009692_050 Hb_009692_050 Hb_001433_210--Hb_009692_050 Hb_000414_040 Hb_000414_040 Hb_001433_210--Hb_000414_040 Hb_147976_010 Hb_147976_010 Hb_001433_210--Hb_147976_010 Hb_031862_210 Hb_031862_210 Hb_001433_210--Hb_031862_210 Hb_000174_120 Hb_000174_120 Hb_001433_210--Hb_000174_120 Hb_002929_030--Hb_001546_140 Hb_002929_030--Hb_001153_170 Hb_002929_030--Hb_007617_030 Hb_002929_030--Hb_089140_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.14078 55.1199 10.0295 0 0.128732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 30.9831

CAGE analysis