Hb_000635_250

Information

Type -
Description -
Location Contig635: 222397-236563
Sequence    

Annotation

kegg
ID rcu:RCOM_0331180
description DNA binding protein, putative
nr
ID XP_012073946.1
description PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KK97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08329 PE=4 SV=1
Gene Ontology
ID GO:0043229
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51930: 225367-234704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_250 0.0 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
2 Hb_001258_040 0.0805331673 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
3 Hb_001545_120 0.0862058758 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
4 Hb_002044_080 0.0868609213 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
5 Hb_044728_010 0.0902559416 - - -
6 Hb_002725_120 0.0909739669 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
7 Hb_009767_110 0.0912714941 - - -
8 Hb_022693_060 0.0916000056 - - -
9 Hb_001860_050 0.0924374591 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
10 Hb_000092_170 0.0932574265 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
11 Hb_004586_340 0.0947366826 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
12 Hb_007881_030 0.0947901885 - - Protein YME1, putative [Ricinus communis]
13 Hb_110291_010 0.0955365273 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000808_230 0.0982743041 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
15 Hb_000959_260 0.0986248172 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
16 Hb_018838_030 0.0993454249 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004143_060 0.0996250969 - - DNA binding protein, putative [Ricinus communis]
18 Hb_007441_200 0.0997481334 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
19 Hb_002835_080 0.1009837533 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
20 Hb_001242_060 0.1009910834 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]

Gene co-expression network

sample Hb_000635_250 Hb_000635_250 Hb_001258_040 Hb_001258_040 Hb_000635_250--Hb_001258_040 Hb_001545_120 Hb_001545_120 Hb_000635_250--Hb_001545_120 Hb_002044_080 Hb_002044_080 Hb_000635_250--Hb_002044_080 Hb_044728_010 Hb_044728_010 Hb_000635_250--Hb_044728_010 Hb_002725_120 Hb_002725_120 Hb_000635_250--Hb_002725_120 Hb_009767_110 Hb_009767_110 Hb_000635_250--Hb_009767_110 Hb_022693_060 Hb_022693_060 Hb_001258_040--Hb_022693_060 Hb_001258_040--Hb_001545_120 Hb_000000_250 Hb_000000_250 Hb_001258_040--Hb_000000_250 Hb_000022_250 Hb_000022_250 Hb_001258_040--Hb_000022_250 Hb_007426_030 Hb_007426_030 Hb_001258_040--Hb_007426_030 Hb_001545_120--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_001545_120--Hb_000808_230 Hb_011673_030 Hb_011673_030 Hb_001545_120--Hb_011673_030 Hb_006502_090 Hb_006502_090 Hb_001545_120--Hb_006502_090 Hb_001776_140 Hb_001776_140 Hb_001545_120--Hb_001776_140 Hb_004600_040 Hb_004600_040 Hb_001545_120--Hb_004600_040 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_000120_790 Hb_000120_790 Hb_002044_080--Hb_000120_790 Hb_000085_050 Hb_000085_050 Hb_002044_080--Hb_000085_050 Hb_044728_010--Hb_009767_110 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_002725_120--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_002725_120--Hb_006649_050 Hb_000291_050 Hb_000291_050 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_005496_130 Hb_005496_130 Hb_002725_120--Hb_005496_130 Hb_000165_250 Hb_000165_250 Hb_002725_120--Hb_000165_250 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79289 1.66627 0.896384 0.894083 1.43812 3.34583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73337 3.18259 2.54814 1.50992 1.99179

CAGE analysis