Hb_000637_020

Information

Type -
Description -
Location Contig637: 50547-51263
Sequence    

Annotation

kegg
ID rcu:RCOM_0149210
description hypothetical protein
nr
ID XP_012092997.1
description PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J8L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51965: 50294-51467
cDNA
(Sanger)
(ID:Location)		 022_D18.ab1: 50294-51062

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000637_020 0.0 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
2 Hb_084849_010 0.0986500207 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001135_030 0.1288579559 - - PREDICTED: interaptin-like [Jatropha curcas]
4 Hb_000191_050 0.1291871193 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
5 Hb_013358_020 0.1305880447 - - ccr4-associated factor, putative [Ricinus communis]
6 Hb_000035_050 0.1328840274 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
7 Hb_002374_270 0.1396681939 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000020_100 0.1407648072 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
9 Hb_003849_190 0.1542993546 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
10 Hb_004631_200 0.1551199229 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002450_030 0.1553839222 - - ATPP2-A13, putative [Ricinus communis]
12 Hb_003964_080 0.1558635524 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
13 Hb_002875_070 0.1596097314 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
14 Hb_005714_100 0.1626208804 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
15 Hb_003670_030 0.1647034169 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
16 Hb_000749_070 0.164989667 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
17 Hb_002235_060 0.1656461236 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
18 Hb_002235_410 0.1667519535 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
19 Hb_000523_030 0.1678927868 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
20 Hb_015807_030 0.1679870609 - - PREDICTED: protein NDR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000637_020 Hb_000637_020 Hb_084849_010 Hb_084849_010 Hb_000637_020--Hb_084849_010 Hb_001135_030 Hb_001135_030 Hb_000637_020--Hb_001135_030 Hb_000191_050 Hb_000191_050 Hb_000637_020--Hb_000191_050 Hb_013358_020 Hb_013358_020 Hb_000637_020--Hb_013358_020 Hb_000035_050 Hb_000035_050 Hb_000637_020--Hb_000035_050 Hb_002374_270 Hb_002374_270 Hb_000637_020--Hb_002374_270 Hb_084849_010--Hb_013358_020 Hb_000072_190 Hb_000072_190 Hb_084849_010--Hb_000072_190 Hb_084849_010--Hb_000035_050 Hb_002450_030 Hb_002450_030 Hb_084849_010--Hb_002450_030 Hb_000749_070 Hb_000749_070 Hb_084849_010--Hb_000749_070 Hb_000203_270 Hb_000203_270 Hb_001135_030--Hb_000203_270 Hb_001135_030--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_001135_030--Hb_007253_010 Hb_001135_030--Hb_013358_020 Hb_159809_050 Hb_159809_050 Hb_001135_030--Hb_159809_050 Hb_004218_120 Hb_004218_120 Hb_001135_030--Hb_004218_120 Hb_000191_050--Hb_084849_010 Hb_000395_040 Hb_000395_040 Hb_000191_050--Hb_000395_040 Hb_000191_050--Hb_002374_270 Hb_000523_030 Hb_000523_030 Hb_000191_050--Hb_000523_030 Hb_000056_080 Hb_000056_080 Hb_000191_050--Hb_000056_080 Hb_013358_020--Hb_000749_070 Hb_013358_020--Hb_000035_050 Hb_013358_020--Hb_007253_010 Hb_004117_170 Hb_004117_170 Hb_013358_020--Hb_004117_170 Hb_018790_050 Hb_018790_050 Hb_013358_020--Hb_018790_050 Hb_000035_050--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_000035_050--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_000035_050--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_000035_050--Hb_001376_010 Hb_029253_010 Hb_029253_010 Hb_002374_270--Hb_029253_010 Hb_002235_060 Hb_002235_060 Hb_002374_270--Hb_002235_060 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_005357_110 Hb_005357_110 Hb_002374_270--Hb_005357_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.0344 154.495 167.845 303.581 22.0208 18.3878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.2952 54.9423 37.2061 34.1601 27.7027

CAGE analysis