Hb_000637_110

Information

Type -
Description -
Location Contig637: 118253-126829
Sequence    

Annotation

kegg
ID rcu:RCOM_1617360
description serine/threonine protein phosphatase 2a regulatory subunit A, putative
nr
ID KJB80118.1
description hypothetical protein B456_013G081300 [Gossypium raimondii]
swissprot
ID Q38950
description Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2
trembl
ID A0A0D2TXG1
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G081300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51968: 118285-127049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000637_110 0.0 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
2 Hb_000349_260 0.0518695598 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
3 Hb_005137_040 0.0542359178 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
4 Hb_001473_160 0.0567815871 - - Vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_000088_170 0.0648867097 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
6 Hb_000300_500 0.0654573443 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
7 Hb_006455_120 0.0710120489 - - n6-DNA-methyltransferase, putative [Ricinus communis]
8 Hb_000441_220 0.0715839987 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_013399_020 0.0726358304 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
10 Hb_000072_120 0.0736431714 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_012506_030 0.074213596 - - AP-2 complex subunit alpha, putative [Ricinus communis]
12 Hb_000260_350 0.0756243093 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000069_310 0.0772852187 - - ubiquitin ligase [Cucumis melo subsp. melo]
14 Hb_093458_040 0.0773242353 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
15 Hb_000915_180 0.0779366092 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
16 Hb_023344_120 0.0793650045 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
17 Hb_013358_040 0.0803409821 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
18 Hb_005918_010 0.0809794555 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
19 Hb_000077_140 0.0816471561 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_001269_330 0.0822199664 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]

Gene co-expression network

sample Hb_000637_110 Hb_000637_110 Hb_000349_260 Hb_000349_260 Hb_000637_110--Hb_000349_260 Hb_005137_040 Hb_005137_040 Hb_000637_110--Hb_005137_040 Hb_001473_160 Hb_001473_160 Hb_000637_110--Hb_001473_160 Hb_000088_170 Hb_000088_170 Hb_000637_110--Hb_000088_170 Hb_000300_500 Hb_000300_500 Hb_000637_110--Hb_000300_500 Hb_006455_120 Hb_006455_120 Hb_000637_110--Hb_006455_120 Hb_000260_350 Hb_000260_350 Hb_000349_260--Hb_000260_350 Hb_000349_260--Hb_000088_170 Hb_001511_060 Hb_001511_060 Hb_000349_260--Hb_001511_060 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_000349_260--Hb_001473_160 Hb_005918_010 Hb_005918_010 Hb_005137_040--Hb_005918_010 Hb_012506_030 Hb_012506_030 Hb_005137_040--Hb_012506_030 Hb_105105_010 Hb_105105_010 Hb_005137_040--Hb_105105_010 Hb_005137_040--Hb_000088_170 Hb_000441_220 Hb_000441_220 Hb_005137_040--Hb_000441_220 Hb_000072_120 Hb_000072_120 Hb_001473_160--Hb_000072_120 Hb_000329_230 Hb_000329_230 Hb_001473_160--Hb_000329_230 Hb_002028_210 Hb_002028_210 Hb_001473_160--Hb_002028_210 Hb_003906_200 Hb_003906_200 Hb_001473_160--Hb_003906_200 Hb_093458_040 Hb_093458_040 Hb_001473_160--Hb_093458_040 Hb_000088_170--Hb_001473_160 Hb_000856_040 Hb_000856_040 Hb_000088_170--Hb_000856_040 Hb_001408_140 Hb_001408_140 Hb_000088_170--Hb_001408_140 Hb_000300_500--Hb_006455_120 Hb_000720_040 Hb_000720_040 Hb_000300_500--Hb_000720_040 Hb_002754_010 Hb_002754_010 Hb_000300_500--Hb_002754_010 Hb_001159_130 Hb_001159_130 Hb_000300_500--Hb_001159_130 Hb_000603_150 Hb_000603_150 Hb_000300_500--Hb_000603_150 Hb_006634_070 Hb_006634_070 Hb_006455_120--Hb_006634_070 Hb_011037_030 Hb_011037_030 Hb_006455_120--Hb_011037_030 Hb_006455_120--Hb_000603_150 Hb_000580_180 Hb_000580_180 Hb_006455_120--Hb_000580_180 Hb_000156_010 Hb_000156_010 Hb_006455_120--Hb_000156_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9139 18.3108 22.5123 26.3253 15.5459 18.8167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1208 14.6043 25.1886 16.7092 15.5559

CAGE analysis