Hb_000637_120

Information

Type -
Description -
Location Contig637: 127208-134051
Sequence    

Annotation

kegg
ID rcu:RCOM_1617370
description protein with unknown function
nr
ID XP_012092990.1
description PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
swissprot
ID Q0IU52
description Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1
trembl
ID A0A067JBJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05872 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase asp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000637_120 0.0 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
2 Hb_149539_010 0.2037564597 - - -
3 Hb_006816_450 0.2046839758 - - conserved hypothetical protein [Ricinus communis]
4 Hb_161072_010 0.2067126004 - - -
5 Hb_000436_010 0.2174291929 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
6 Hb_001100_010 0.2205404748 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
7 Hb_001799_080 0.2287814389 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
8 Hb_004410_100 0.230709064 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
9 Hb_004116_200 0.234820262 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
10 Hb_004871_070 0.2382483326 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
11 Hb_024468_020 0.2393719366 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_000094_130 0.2424518164 - - PREDICTED: random slug protein 5 [Jatropha curcas]
13 Hb_001856_010 0.2433302388 - - DNA binding protein, putative [Ricinus communis]
14 Hb_002391_230 0.2438548315 - - hypothetical protein RCOM_0745080 [Ricinus communis]
15 Hb_014549_020 0.2446936193 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
16 Hb_002205_190 0.2492285959 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
17 Hb_000990_060 0.2495997639 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
18 Hb_002496_040 0.2498437789 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
19 Hb_005686_030 0.2502034942 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
20 Hb_000172_560 0.2520694296 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]

Gene co-expression network

sample Hb_000637_120 Hb_000637_120 Hb_149539_010 Hb_149539_010 Hb_000637_120--Hb_149539_010 Hb_006816_450 Hb_006816_450 Hb_000637_120--Hb_006816_450 Hb_161072_010 Hb_161072_010 Hb_000637_120--Hb_161072_010 Hb_000436_010 Hb_000436_010 Hb_000637_120--Hb_000436_010 Hb_001100_010 Hb_001100_010 Hb_000637_120--Hb_001100_010 Hb_001799_080 Hb_001799_080 Hb_000637_120--Hb_001799_080 Hb_004668_100 Hb_004668_100 Hb_149539_010--Hb_004668_100 Hb_014549_020 Hb_014549_020 Hb_149539_010--Hb_014549_020 Hb_149539_010--Hb_001100_010 Hb_000316_020 Hb_000316_020 Hb_149539_010--Hb_000316_020 Hb_003754_080 Hb_003754_080 Hb_149539_010--Hb_003754_080 Hb_002756_020 Hb_002756_020 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_007161_010 Hb_007161_010 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040 Hb_009314_010 Hb_009314_010 Hb_006816_450--Hb_009314_010 Hb_163837_010 Hb_163837_010 Hb_161072_010--Hb_163837_010 Hb_001124_040 Hb_001124_040 Hb_161072_010--Hb_001124_040 Hb_037226_010 Hb_037226_010 Hb_161072_010--Hb_037226_010 Hb_138652_010 Hb_138652_010 Hb_161072_010--Hb_138652_010 Hb_130194_010 Hb_130194_010 Hb_161072_010--Hb_130194_010 Hb_000436_010--Hb_006816_450 Hb_003878_030 Hb_003878_030 Hb_000436_010--Hb_003878_030 Hb_000723_160 Hb_000723_160 Hb_000436_010--Hb_000723_160 Hb_000436_010--Hb_007161_010 Hb_000179_050 Hb_000179_050 Hb_000436_010--Hb_000179_050 Hb_000436_010--Hb_001100_010 Hb_001100_010--Hb_014549_020 Hb_001100_010--Hb_006816_450 Hb_007304_040 Hb_007304_040 Hb_001100_010--Hb_007304_040 Hb_000157_010 Hb_000157_010 Hb_001100_010--Hb_000157_010 Hb_001766_100 Hb_001766_100 Hb_001100_010--Hb_001766_100 Hb_004460_010 Hb_004460_010 Hb_001799_080--Hb_004460_010 Hb_000120_120 Hb_000120_120 Hb_001799_080--Hb_000120_120 Hb_013818_060 Hb_013818_060 Hb_001799_080--Hb_013818_060 Hb_020096_020 Hb_020096_020 Hb_001799_080--Hb_020096_020 Hb_008014_070 Hb_008014_070 Hb_001799_080--Hb_008014_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65857 2.34582 0.206945 0.150302 2.46465 1.1989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74137 1.47423 11.9786 5.30517 0.256737

CAGE analysis