Hb_000638_060

Information

Type -
Description -
Location Contig638: 47228-52243
Sequence    

Annotation

kegg
ID rcu:RCOM_1188330
description ATP binding protein, putative
nr
ID XP_012070600.1
description PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
swissprot
ID Q8L7V3
description Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=2 SV=1
trembl
ID A0A067KTF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03719 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51997: 47292-52928 , PASA_asmbl_51998: 47292-52894 , PASA_asmbl_51999: 47255-52928 , PASA_asmbl_52000: 47255-52894
cDNA
(Sanger)
(ID:Location)		 019_A03.ab1: 52020-52928 , 032_I07.ab1: 51580-52928

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_060 0.0 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
2 Hb_003847_040 0.0870151523 - - adenosine diphosphatase, putative [Ricinus communis]
3 Hb_000283_140 0.0885884704 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
4 Hb_002217_320 0.0887321269 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
5 Hb_000570_020 0.09537569 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
6 Hb_012807_150 0.1007394068 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
7 Hb_006120_060 0.1016588483 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
8 Hb_002942_230 0.1021116641 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
9 Hb_002217_080 0.1046896385 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
10 Hb_001195_310 0.1061992292 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003929_180 0.1115044188 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
12 Hb_001411_130 0.111515397 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
13 Hb_000622_330 0.1120902231 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
14 Hb_004218_130 0.1151154039 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
15 Hb_001969_140 0.1153042893 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
16 Hb_028639_030 0.1169130906 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
17 Hb_010050_020 0.1171075208 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
18 Hb_000418_020 0.1179191216 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
19 Hb_004943_040 0.1197657769 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
20 Hb_021576_070 0.1199393632 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]

Gene co-expression network

sample Hb_000638_060 Hb_000638_060 Hb_003847_040 Hb_003847_040 Hb_000638_060--Hb_003847_040 Hb_000283_140 Hb_000283_140 Hb_000638_060--Hb_000283_140 Hb_002217_320 Hb_002217_320 Hb_000638_060--Hb_002217_320 Hb_000570_020 Hb_000570_020 Hb_000638_060--Hb_000570_020 Hb_012807_150 Hb_012807_150 Hb_000638_060--Hb_012807_150 Hb_006120_060 Hb_006120_060 Hb_000638_060--Hb_006120_060 Hb_001411_130 Hb_001411_130 Hb_003847_040--Hb_001411_130 Hb_026549_070 Hb_026549_070 Hb_003847_040--Hb_026549_070 Hb_000959_300 Hb_000959_300 Hb_003847_040--Hb_000959_300 Hb_001195_660 Hb_001195_660 Hb_003847_040--Hb_001195_660 Hb_000414_080 Hb_000414_080 Hb_003847_040--Hb_000414_080 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_012762_060 Hb_012762_060 Hb_002217_320--Hb_012762_060 Hb_001847_050 Hb_001847_050 Hb_002217_320--Hb_001847_050 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_003680_030 Hb_003680_030 Hb_002217_320--Hb_003680_030 Hb_006829_070 Hb_006829_070 Hb_002217_320--Hb_006829_070 Hb_000570_020--Hb_004943_040 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_007537_030 Hb_007537_030 Hb_000570_020--Hb_007537_030 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_012807_150--Hb_000271_220 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_000622_330 Hb_000622_330 Hb_006120_060--Hb_000622_330 Hb_000689_050 Hb_000689_050 Hb_006120_060--Hb_000689_050 Hb_006120_060--Hb_000283_140 Hb_010050_020 Hb_010050_020 Hb_006120_060--Hb_010050_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0402 31.4678 53.1693 84.7908 15.052 8.09692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.83124 8.23918 13.7185 25.4278 50.6406

CAGE analysis